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Mutant Lines
12-0797-1

12-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19630774 [Map]; Strand: c
  - AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
    Distance: 0; Region: exon2 (CDS)
  - AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
    Distance: 0; Region: exon1 (3UTR)
  - AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
    Distance: -485; Region: promoter
Flanking Genome Sequence: 12-0797-1 - 5-prime edge
```
GNGATAAACN AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC NGCATNGAAG CATCGACTGC GTCCGGGNCT 
CTATTGGGAA TGTNGATGAC ANAGGCCCCT GATNACAGCA GGCTAATGTT 
AAAANACAGG GACCATNGAC GAAATGCTAA TTTTCAATNA TCTNATGGAA 
AGCAAACACT GACAAGCT
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 19630821 [Map]; Strand: c
- AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
  Distance: 0; Region: exon2 (CDS)
- AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
  Distance: 0; Region: exon1 (3UTR)
- AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
  Distance: -438; Region: promoter

GATGCGGGCT CTAAAAACAC ATCTGGACCG GGCAAAGAGC TTGCCGTTGG 
TGAAGAAGAT GTCAGATTTT CATCTGCTTC TCTTTGTGGC TCAGTTTCTG 
GACGTGTCAT CGGACGTCCC TGCTTTAGCC GAGTGTGTGC GTCTGCAGTC 
GCCTGTCCCA GAGGGCTATG CGTTGCTCAT CGAATCAATG GCCAACACTT 
GTTAATTTTT GTGTCATTGT TTTTTGGTTC TTGATACAGT ATATCATGTT 
CGTTTTATGG TCCAGAAAAT CTTTTTTACT AGTTGACAAA TGAAAAATCT 
CTAGTGTACT CGTGATGTAT TTGATTCAAG TTTGGGGGTT AATTTAAGTT 
ATCAACAACT TGTAGAAACA AAGTTAATTC ACAGAGTAAT AAATCATTCT 
AATAGGTATG CTCAGGGGCA AATTGGCAAA ACATAAAAAT AAAAAGAGAG 
CTACTAAAGT TTTCGAGCGA AAGCGAAAAT GAAAATTTTA TAATTCGAGC 
GAAATGTTAA AAAGCTGAAA ATTGGGGGAA GAAGAGAGAA GAGTTTCATC 
GTCACTGGAA TCAATAGAGT CAATTGGCGG GAGAGGTTAG TCTCGAAAAG 
AAGTGGAAGC CCTAGGGGGA AACTTTCTCG CTCACTCGCT CGTCTGCAAA 
CACCATGGAA NACAGTCCTC AAGGCCTTGN GAGTCTCTCT TTGCTTGTTG 
ATTTGTTTGG GAATTTGGAT TACTCTTAAN TTTTCTGCTG GGCGTGTAAA 
AANGANTAAA AAT

AT2G47970.1

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47970.2

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47980.1

Model type: Protein coding
Short Description: sister-chromatid cohesion protein 3
Curator Summary: Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description: sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link: InterPro Scan - TAIR