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12-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19630774 [Map]; Strand: c
      • AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
        Distance: 0; Region: exon2 (CDS)
      • AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
        Distance: 0; Region: exon1 (3UTR)
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: -485; Region: promoter
    Flanking Genome Sequence: 12-0797-1 - 5-prime edge
    GNGATAAACN AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC NGCATNGAAG CATCGACTGC GTCCGGGNCT
    CTATTGGGAA TGTNGATGAC ANAGGCCCCT GATNACAGCA GGCTAATGTT
    AAAANACAGG GACCATNGAC GAAATGCTAA TTTTCAATNA TCTNATGGAA
    AGCAAACACT GACAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19630821 [Map]; Strand: c
      • AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
        Distance: 0; Region: exon2 (CDS)
      • AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
        Distance: 0; Region: exon1 (3UTR)
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: -438; Region: promoter
    Flanking Genome Sequence: 12-0797-1 - 3-prime edge
    GATGCGGGCT CTAAAAACAC ATCTGGACCG GGCAAAGAGC TTGCCGTTGG 
    TGAAGAAGAT GTCAGATTTT CATCTGCTTC TCTTTGTGGC TCAGTTTCTG
    GACGTGTCAT CGGACGTCCC TGCTTTAGCC GAGTGTGTGC GTCTGCAGTC
    GCCTGTCCCA GAGGGCTATG CGTTGCTCAT CGAATCAATG GCCAACACTT
    GTTAATTTTT GTGTCATTGT TTTTTGGTTC TTGATACAGT ATATCATGTT
    CGTTTTATGG TCCAGAAAAT CTTTTTTACT AGTTGACAAA TGAAAAATCT
    CTAGTGTACT CGTGATGTAT TTGATTCAAG TTTGGGGGTT AATTTAAGTT
    ATCAACAACT TGTAGAAACA AAGTTAATTC ACAGAGTAAT AAATCATTCT
    AATAGGTATG CTCAGGGGCA AATTGGCAAA ACATAAAAAT AAAAAGAGAG
    CTACTAAAGT TTTCGAGCGA AAGCGAAAAT GAAAATTTTA TAATTCGAGC
    GAAATGTTAA AAAGCTGAAA ATTGGGGGAA GAAGAGAGAA GAGTTTCATC
    GTCACTGGAA TCAATAGAGT CAATTGGCGG GAGAGGTTAG TCTCGAAAAG
    AAGTGGAAGC CCTAGGGGGA AACTTTCTCG CTCACTCGCT CGTCTGCAAA
    CACCATGGAA NACAGTCCTC AAGGCCTTGN GAGTCTCTCT TTGCTTGTTG
    ATTTGTTTGG GAATTTGGAT TACTCTTAAN TTTTCTGCTG GGCGTGTAAA
    AANGANTAAA AAT

AT2G47970.1

Model type
Protein coding
Short Description
Nuclear pore localisation protein NPL4
Computational Description
Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47970.2

Model type
Protein coding
Short Description
Nuclear pore localisation protein NPL4
Computational Description
Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47980.1

Model type
Protein coding
Short Description
sister-chromatid cohesion protein 3
Curator Summary
Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description
sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR