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Mutant Lines
12-0800-1

12-0800-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19609511 [Map]; Strand: w
  - AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
    Distance: 0; Region: exon4 (3UTR)
  - AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
    Distance: 0; Region: exon3 (3UTR)
  - AT2G47895.1 - [+] show detail - other RNA
    Distance: -962; Region: promoter
Flanking Genome Sequence: 12-0800-1 - 5-prime edge
```
AATCAGGGGA CGTTTCGCCA AGGCAGCAGA TCCATGAAAG ATGATGAGGT 
TACTTTGATA ATCAAAAATC TTTTGTATTA ATCGAATCAT ATAGTGTGTA 
TGATCAGATA AGTTTTTGTA TTCTAAGCT
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 19609419 [Map]; Strand: w
- AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
  Distance: 0; Region: exon4 (CDS)
- AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
  Distance: 0; Region: exon3 (3UTR)

ANNAGANNNN TGGCGCTNGG TATNANGGNN NNCCTNGCNT TGAGTAATGA 
NTCATTGTGN TATCNANACN TTTANGAANG ANNAGAGTAT GGTNCNTAGA 
GAAANNTGNC GCCGANNTAN CTGGCANNGG NCAGTNAGNN CNCTANNGTG 
CCAGTATTGA AATGGNTANT NTNACANNAT GNTAGGCAAG ANTGGACCCC 
ACANGNGTCA ATAAGTAGCG ACCCCTTGCG AGGGTTGAGG CNACACGNTA 
ACTNAANCTT CTTNTGCCTG GNCNGTGGAC NANNCGTNCC CNNCNNGNAC 
NNNGACAGAN ANNTNTCNGG NNTANTGNAC GCGGTTGTNA TATGTCTCCG 
ACNANTGANA CANTTATTAT NNNTCTGNAN AGTANTTTTN NTTTATGCTT 
GAANGAACCA AAATANTANA CTGTNNTTNA TATNGACANT AGAAAANTGA 
TCCGCANGGA AAANAATNAN NACNGGACAC TNACAATNAT ACGTGNGCNT 
GCGATNTACT ATTNCCNGGN TCGNNTNTGA AACGCNNNTT CNGAGCTAGG 
AATTGGGCCC CNGCATCNAT CTTNGCATNT GGGGTTTGAA ATTTCAGACA 
CCCAGGCTCA TATCTGGATA GTCCACGGAG CTGTCGGATC ATCTCATNTT 
TGTATNTNNC GGAAGGTGGN GGACNATTCT GGAGCATTTN AAACTTTNAG 
AGAAGAAAAT AAACAGAGCN NTTGGCTNGA AAAAAAACAG AGCAN

AT2G47890.1

Model type: Protein coding
Short Description: B-box type zinc finger protein with CCT domain
Computational Description: B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47890.2

Model type: Protein coding
Short Description: B-box type zinc finger protein with CCT domain
Computational Description: B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Phenotypes

Morphological phenotypes

Determination of insertion point(s)

AT2G47890.1

AT2G47890.2

AT2G47895.1