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Mutant Lines
12-0809-1

12-0809-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20902500 [Map]; Strand: w
- AT1G55890.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT1G55900.2 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
  Distance: -553; Region: promoter
- AT1G55900.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
  Distance: -568; Region: promoter

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA AGATTGCAAA GACCAATGAT TTCTTAAAGT 
TGAAGCTAGA TTTGCCGTCC CAGGAAGAGT AAGTCATTTG CTACTCTCTC 
ACTAAGTGTC TCGTTGAATT GTGTCTGAGC AGCCTTAAGC TATATGTATT 
TGCNTGGTGT TGCTTTGTGG CTTTTCTACT TCTCTAAACT TTCCTCTGTG 
GAAGTAAGAC TTGTTTCTTT CTATGTAGTT TCGCTTATTT CACTGGTGCA 
AAAAACAGCA TGTAGTCGAG GTTTAGGCAG AAGAAACCCT ACAAATTTAA 
TAAATTTTGG TTATTTGTTT TCTCTTTTTG ACACGAATCA ATTTATTATT 
TTTGTTGGAA AAATATTTTC ATTTTATTTG GTAAATAAAT AGTGTAAAAT 
AACTTCATTA ATTAGTTGTT AAAAGCCCGA AATGCAAAAA TAAAATAAAA 
TAGATTCTCT TCTTGGTAAA CAAGTAAAAA AAATAGAAAA ATATCGGAGT 
AGAAATAAAC CGACTACCAA ACAGTGGATA AGAGAGTTAA AACGAGCCCA 
TAAAACCTGT TTCCAAACAG NCCATCTGTT AATTTTCCTT TCTNCGATCA 
ATTCCAAAAC CCTACTTNAA CCCTGNGATT NATTCATNAT TCNCANANTT 
NGAANAAACN CCNNANTNNN AAATGGNNTN TATTGNNCTT NNATCTCNCC 
TGTTGCCANN ATTANNAANC TCAA

AT1G55890.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55900.1

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator Summary: component of a translocase in the mitochondrial inner membrane
Computational Description: TIM50; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2137 Blast hits to 2133 proteins in 243 species: Archae - 0; Bacteria - 8; Metazoa - 726; Fungi - 412; Plants - 369; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55900.2

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator Summary: component of a translocase in the mitochondrial inner membrane
Computational Description: TIM50; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1).
Link: InterPro Scan - TAIR