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12-0810-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11577655 [Map]; Strand: c
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: 0; Region: exon4 (CDS)
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: -851; Region: promoter
    Flanking Genome Sequence: 12-0810-1 - 3-prime edge 
    CCTGAGCCTC TACCGGAATG TGTGATTGTT CCGGCTGAGA AAGATAGGTT 
    TAAGGAAACG GGAAGGTTGA AGTTTGGTGG TACGGAGGCG CGTGAACGGC 
    GGAGAAATCG CCGGCAGCAA CGTCGGCCTG AGATTGAGAT TGAGATTGAG 
    AGTGATCCTG ACGACAGAAA ACTTTTATAA GATTTGTTTG TGCCATTCTT 
    TTTACTTAAA ATTCGTTTGT GAGTATAATA AAATAAAGAG TAAAGATTTG 
    AAAAAGAAAG AAAGAAATAG AGGATAAATT TGATAGGCCT TTGGGCTTTC 
    ATGAATTGTG AATGATTTAA GCTCATTCAT TACCCAAGCC CAAGTTAGGA 
    CATGAACATG GTAAACAAAA AAAGAAAACA TCATGCTAAT AAGTCAATAG 
    AGAATTAGAG ATATACAACC ACGAGCCCAA GTTAGACTTC TTTAATAATG 
    GTTAGGCTCA GACCATCGAT TGCTTTAGGC CTGGGTAAAT AAACCTAACC 
    AAATGGATAC TAAAATTCTA TAACCGAATG AACCGAAACT AAATTAGTAT 
    TGAACCGAAA TATTTATTTA TAAAATTCGA GCTCAGACTC GCACTTAACA 
    TCTAACCCGA ACTTAAACAG AACAAATCGG TTGTGACGTC AGGTAAAAAC 
    CANTCCGCCC GAAAGCTGAG CTCGAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11577539 [Map]; Strand: c
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: 0; Region: exon4 (CDS)
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: -967; Region: promoter
    Flanking Genome Sequence: 12-0810-1 - 5-prime edge 
    GGCTCANGAT ACCTAAGGGT ATCGGTAACA GTAAGAATAG TACATGAAAC 
    GTTGTCGAAA TCTTCGCATG GCTGGCGCGG TTGATGGGAA TTAATTGAAG 
    AGTAATCTTG AGACTCAAGG AAATCGACTG AGTCGGAACA ATCCATGGGG 
    ACTTCTTGAA TAGGATCAAC GGAGCAACCG TCTAGAGAGA AAGATTTGAA 
    TT

AT1G32170.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 30
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description
xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR