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12-0881-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17690867 [Map]; Strand: c
      • AT2G42480.1 - [+] show detail - TRAF-like family protein
        Distance: -939; Region: promoter
      • AT2G42485.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-0881-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA CAGGCTGTTG CATAAGTAGC ACTGCTCTTG 
    CCCACATATA TGTAGCAGAG ACGAGATGGC TCCAAGTCCC ATGGAGTCGC 
    TCTTGCCACA AATCAATTTC ACAAATTAAG AAATTGAGCT CAGAAAATTT 
    CAGAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17690858 [Map]; Strand: c
      • AT2G42480.1 - [+] show detail - TRAF-like family protein
        Distance: -930; Region: promoter
      • AT2G42485.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-0881-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGT 
    GAGCAACAGG TAACTCCAGT GTTTTTCTTT GGGTTTTAGC TAAGATTTTT 
    AGGCTATATG TATTGCATTT GGTTTGGACT ATATGTTATC TGTGTGGAAT 
    CGAATCAAAA TTATCAATCT GGTTCGTCGG AGTTGGATCA ATTGTGGAAG 
    TGACAATTGC TAGTTTGTCG TTTGTGTTTT TAATTTCGGT TCGATTTACA 
    TGGTTTTGAA AAATTCAATT GATTTCGGTT GGGTTTGAAT TGGAATTAAA 
    GGAGAAAAAC ACTGAAATCA CGCACTCGAG GCTTTTTTTA AAAAGAGCGA 
    GTGTGTTTCA AAACAAGCCA TTTGGTGGGT TAGAACCCAC AGAAAACGTA 
    GACACGCCCT CAACACGCGA TCGGTGAGAG TGGGTGTGAA ATCACGTAAA 
    AGGTGAGAAT GGGGTATGAC ATGGAGCGCT CTGATTGGCT TATAAAATGA 
    AAATAGTAGA GATGTTGCTC CTCTCTTCCA ATGTTTATAT TTATTTGCTT 
    CTCTTTTCCA AAGTNTGAAA CTAATGCNNT TCNTANAANA ACACNCCCCC 
    CCCCCCCCCC AANAAAAAAN NNNNNNTNGA AATTTTTTTN NAAANATTCC 
    NANGCNAANG GGNTTTTTNT TTTTCNNCNC CCCCCCCCCC NCCCNNNNNA 
    A

AT2G42480.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1); Has 20820 Blast hits to 13670 proteins in 1127 species: Archae - 516; Bacteria - 2848; Metazoa - 7681; Fungi - 1563; Plants - 1737; Viruses - 68; Other Eukaryotes - 6407 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42485.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR