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12-0894-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20527342 [Map]; Strand: w
      • AT1G55020.1 - [+] show detail - lipoxygenase 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-0894-1 - 5-prime edge 
    CTGCTCACTT GGAGGATTGG ATCACAACAA TCACGTCGTT AACCGCAGGC 
    GAATCCGCTT TCAAGGTCAC GTTCGATTAC GAAACCGATT TCGGTTACCC 
    TGGAGCATTC TTGATCAGAA ACAGCCATTT CAGTGAGTTT CTTCTCAAAA 
    GTCTCACACT TGAAGACGTT CCAGGCCATG GCAGAGTCCA TTACATCTGT 
    AATTCTTGGA TTTACCCTGC TAAACACTAC ACTACAGACC GAGTCTTCTT 
    CTCCAACAAG GTAACTACTG GCTTCTCTAT TTCTTTTCTT GACTAATATT 
    AGTCGAAAGA TGTTTTCTTG ATAACGTTTG ACACAATATA TGTTTACTTG 
    TGTTTCAGAC TTATCTTCCA CATGAAACAC CAGCGACGCT GCTCAAGTAT 
    AGAGAAGAAG AGCTAGTGAG TTTGAGAGGA ACCGGCGAAG GAGAGCTTAA 
    GGAATGGGAC AGAGTATATG ACTATGCTTA CTACAATGAT TTAGGCGTCC 
    CACCAAAGAA CCCACGGCCT GTACTTGGAG GGACACAGGA GTATCCTTAC 
    CCAAGAAGAG GAAGAACCGG GCGGAAACCA ACTAAAGAAG ATCCTCAAAC 
    CGAGAGCAGG CTACCGATCA CATCGAGCCT ANACATATAT GTTCCACGAG 
    ATGAGAGATT TGGACACTTG AANATGTCTG ATTTCCTTGC TTATGCTCTA 
    AAAGCGATTG CTNAGTTCAT CCAACCTGCC TTGAGGCTGT TTTCNACNAT 
    ACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20527226 [Map]; Strand: w
      • AT1G55020.1 - [+] show detail - lipoxygenase 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-0894-1 - 3-prime edge 
    GTGAGCAGCC TTCCCTAGTT TGCCTTTAGA ACCGTTTTCT GCAAAAAAAA 
    TATCATAAAT ATTAGAATAA TGATTCTATA ATAGGAAAGG AATATTTTTT 
    TTCTATTTTC CTAANAAAAA AAAACTTTCT TATTTAGTTT TCCACCNGAT 
    AAAAANAATA TTTNGCCATA TCAAACTATN GAAAATATAA AACAGGTNCA 
    TCCTTTTTTT TTTTTTTNNG AAAAAANTTT TTTTNNAANC NTTTNGGGNA 
    NNNNNNTTTN CNAAAANTTC CCCCNNGGGG NANTNGGGCC CNAAAANNAA 
    AANGGGGANN NNNTTTTNGG GNAAAAAAAA NCCAANTTTT NCCAAAAAAA 
    AAANGGGGGG GGGGGNNNNN NAAAANTTTN GGGNANNGGG GNAAAAAAAA 
    AAAAANTTTT TTTGGGNNAA ANNCCCCCNT NNTTTTNNNN NGGGGGGGNN 
    NAAAAAAANN NNNNTTTTTN ANTTNCCCCC CNGGGNNNGN ANNCCCNGGG 
    GNNTTNNA

AT1G55020.1

Model type
Protein coding
Short Description
lipoxygenase 1
Curator Summary
lipoxygenase, a defense gene conferring resistance Xanthomonas campestris
Computational Description
lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR