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Mutant Lines
12-0909-1

12-0909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 54590 [Map]; Strand: c
- AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -1141; Region: intergenic
- AT4G00150.1 - [+] show detail - GRAS family transcription factor
  Distance: 2609; Region: intergenic

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCC TGGTTGTATA CACGTACATA TACACTTCAC 
TACTCTTATT ATCTAGTTCC ATATTACGCT ATATATTTAT GAATTTATAT 
ACATAGACCA TACTCATGTC CTTGAAAATC AGTTACATGT TTCTTTTGTT 
CTTATCTTTA GTCTTTTGTG TTTTCTCTTT TGGCCTTTTT TCTTCCTTTA 
TCTATTTACA AGTCAAGTCA GCTTATTAAC AACGCGGTAT TTCCATCCCC 
ACAAAATCTT CTTATGGCTA CTTTTATATA TATATACATA TCAAACTATA 
CTGACGACAA AATAAATAAA TTAAGAAAAA AAAAAAAAAA AAGGGGGGGG 
GGGCCANGCN TTNTTTNACN AANAANANGT TTAANNCNNT TNGNATGGGG 
CCCCCNCCTN CCTGGNTNGG ATCNTNTAAA ACAAAGGGGG GAAACTTTTT 
TNTTTNGNNG GGNGGGGANN CCCAATNGGG NGGGANAAAA NNAATNTGTT 
TNAAANAAAN NACNGGAAAN TNCCNCCGGN AAANAAANCN NNCTTTTNAA 
AAAANNGGGG GGNNNCCCNG GAAAAAAANA ANAANANAAA ANCTNTNGGG 
GGAGGGGGNN AAANCCNNGG AANAAAAANG NCCCCCCNNN NNTGGNAAAA 
AANNNNGGCC CCCCCCNNNN TGGAAAANAA AANCCCCCCC NCNGGNGNCN 
NNAAAAAAAA NNCCNNNCNN NGGGNNTAAA NNA

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 54641 [Map]; Strand: c
  - AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: -1192; Region: intergenic
  - AT4G00150.1 - [+] show detail - GRAS family transcription factor
    Distance: 2558; Region: intergenic
Flanking Genome Sequence: 12-0909-1 - 3-prime edge
```
CTTAAGCAAT ATAAAGGCAT GCATAGAGAT GGAAATAAAC ATGTGTAGAG 
TTTGATGATC TAACATTAAT AAAGGATTCC ACCTGTTACA GAATCTTGAT 
GAACTTGAGT AGAGTTTGTT TATTGAAATA AATAGACTAA CTAAGAAAAT 
AAATGAAGTA CTTGTAAAGT GAGAGGTTGA GGAGCAGATA TGGTGGGCAA 
GCT
```

AT4G00140.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00150.1

Model type: Protein coding
Short Description: GRAS family transcription factor
Computational Description: HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR