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12-0920-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11585508 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 4961; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 1008; Region: intergenic
    Flanking Genome Sequence: 12-0920-1 - 5-prime edge 
    ATGCTCGAAC GGTGTTATTT TCAAAATTGT GTTTCCCGCT TTGGAGATAT 
    TTAGTTAGAA TCCCATTAAA AACTTTGGAG ATAATAGGTT CAATTTGTTC 
    TCAAAAACTA GAGTTGAAGA TGAACCCTTC GTTTAATTAG TAGCAAATTA 
    TCATCTGCTT GCTCTATTTT TTTTTTCNCC NTTTAATTAG TAAATNTNCA 
    ANCNTNGTTN ATTNAGTTCC CATTTTTTTN CNTNCAATTN TNTNTTTNCA 
    ATNTAAATTA GGGAAATTTT NCAAAANTTT TTNGAAAAAT CAATTTAANN 
    ANANANANAA NTAANNCNCN TGAATNTNTN TNGTNCATAA CAAAAAAAAA 
    AAAGTTNGGT NGANAAAAAA NCCAAATCGT NGANCCCTTT TNAAGNNAAC 
    AANCNCCCCA AAAAAANCCA GGNGGGNGGC TTTNTTTANT NTNTNTNAAA 
    GGAGNCTTNT GNTCCCTTTT AAAANNGATT ANGGNGTNGC AAAANGTAAA 
    TNAAATNTTT CCCCTGATAA AATCTGGGCC GGGGTTAAAN AGCCCTATTT 
    TTGGGCNTAN GGGACCCCNA AAACAAANCT CTCTGCCTTT AGGATTAGGN 
    TTNNGGAANT AANNGGGGAA ATTNCAAATT ATGCTTTTGA AGAAAAANTT 
    TTAGGGCGCC AAAAAAANAA AAAANNNGGG GGGGNNACCC CTGNNCNTNN 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11585423 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 4876; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 1093; Region: intergenic
    Flanking Genome Sequence: 12-0920-1 - 3-prime edge 
    ATGAACACNG AAANGGNAGN GGNCTCTNCC GGTCCGTTCC NGACCGGNAA 
    NNCATAATCG TAANTCTACG TGTTCTTTGT GTCGAAGAAT CACATAAATA 
    GCTGATTTCG CAACGTAAAC TCTTCTTCCA CAAATAAACC GTCAACGAAT 
    ATTCAAATTT CAAAANNCAT TTCTAATTTC TTCAAAACGA GTTTGAATTT 
    GAGNGGAGAA GCGATTTTGN TCGTCTATCT TCATCTGATT CTTTTCTCCG 
    ATCAATTGAT TCGTGTNCAA TGTCGTCTGA TTCGGGGGGT TAGTTCAAAT 
    NGGGATC

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR