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12-0932-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24538897 [Map]; Strand: c
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-0932-1 - 5-prime edge 
    CTGGTGATGA GTGATGAAGT AGGTGAAATA GCTTGTACAG GTCTTGAGAG 
    TTGTTGTATT TATGCTATTT AAAAGTTTGG ATTATGTTAT TTTGACCCCG 
    TTATTACGAT TTGTTTCATT TTGGTCCCTA CTTTGATTTT TCGTTGTAGC 
    CGCCACTTAT TGTATAAAAG GGTCCCACTA ACAAAATTCA AAAGTCATAT 
    TCAACAATAT GAATGCTAAG TTTTAATTTA TAGAATAAAG TTTGGGAATA 
    TAATTACAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24473660 [Map]; Strand: w
      • AT1G65800.1 - [+] show detail - receptor kinase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0932-1 - 3-prime edge 
    ATGAAAACTG NAAGGGNANT GGNCTCTCCC TGCCGTTNCN GGGCGTTTAA 
    ANCATNTCCG ATAGTAAAGT NTCTGNCGGG AANTCGANNC TCTGCCACAA 
    ANATCCACTT GGTTTATTAT TTNTGGAGTC TCTAANAACA ANACTTACCG 
    TTATCAAGAA GCTCTNCAGC CACGTGGTGA TCTCACATCT CCTNCGGTTN 
    TNTTCGTCCA CCAAACNNGC CTATCGGACT GATCGAAAAT GACGAGGTTN 
    TTGGCGGATT TTTTGAGAGN NCCGGTGGNN CTAGAGAGAG GATTGTCTCT 
    GTTNGCNCCC CATACGNNGG TTCTTNNGGG GATTATCTTG CACCATCTGC 
    CGAGANACCA ACGNGANCTT GAGNCGGGAT TGAANANACC GCGCTCGAAN 
    ATTNGACTNG GAGATATNGT GGTTTTGNTG CTNGAGATAG AGAGAGATTC 
    TGTGGCTGAA AAGTTGCTNG CATCCACAGA GANNGCAAGA NACAGNATTN 
    TGATGAATNA TATGAAGTAA GAATGATGAT NGTGGGGCAC ATTTCTCATC 
    TCTCTCTCTC TCTNTNGNGN GAGACACTTT NNGGGNGNTN TGTTTTNTTC 
    TCTTCTTAAN AAAATTTTGT GCNCATNTNA GAGAAANTTT TTNTCTGGNG 
    ANATCANCAC NTTTTGGGGN GTAAAAGTGN GANACCNTTT TTCNCANGAT 
    TTCTNTTTNG GGGNNAAAAT NTTTTNTTNN CNCCCACNTT TTNNGGGGTC 
    TTNTNGNCGN TNNNAAANNT NTNNNCNCTN NCCCCTNANA GGG

AT1G65800.1

Model type
Protein coding
Short Description
receptor kinase 2
Curator Summary
encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.
Computational Description
receptor kinase 2 (RK2); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Protein kinase, ATP binding site (InterPro:IPR017441), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: receptor kinase 1 (TAIR:AT1G65790.1); Has 122202 Blast hits to 120473 proteins in 4562 species: Archae - 111; Bacteria - 13838; Metazoa - 44423; Fungi - 10348; Plants - 34995; Viruses - 424; Other Eukaryotes - 18063 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65930.1

Model type
Protein coding
Short Description
cytosolic NADP+-dependent isocitrate dehydrogenase
Curator Summary
Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
Computational Description
cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
Link
InterPro Scan - TAIR