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Mutant Lines
12-0996-1

12-0996-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 18106369 [Map]; Strand: c
- AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
  Distance: 0; Region: intron11 (CDS)

AGTGGGAGAA TGGCTTCGTC TCCGTGTACA GCAAGGATAA TCCAAACTTG 
CTTTTCAGCA TGTATGCAGT TTTGTCTCAG TTTTCTAGTG GCTCTTGTAC 
ATTAGTGCTA GGCCTTTGTT TTTGTCATTG TTTGATAGTG CAGCTTAAAT 
AGTGACTGGG GTTTGCATTC TTGCCTGCAG GTGTGGATTT GAAGTCCGCG 
TGCTTCCAAA AATCAGGATG GGTCAAGAAG CT

AT4G38780.1

Model type: Protein coding
Short Description: Pre-mRNA-processing-splicing factor
Computational Description: Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link: InterPro Scan - TAIR