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12-1011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23559845 [Map]; Strand: c
      • AT1G63510.1 - [+] show detail - pre-tRNA
        Distance: -587; Region: promoter
      • AT1G63520.1 - [+] show detail - Protein of unknown function (DUF3527)
        Distance: -42; Region: promoter
    Flanking Genome Sequence: 12-1011-1 - 5-prime edge 
    NNAAANANNN AAAAAAANNN NACANNANAA ANAAAAAAAT TTTNAAAAAN 
    CTTTTTAAGA NTAACAAAAC GGTTTTTCGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TNNTTCTAAG CNAATCATAG AAAGGGTGTG 
    GAAAAAGNAA CAAGTCAAAT ACCAANTGAT GGTTNCAGAG NAGTGTNCCT 
    CANGGATGAT AAAAAGAAAA CCTGCAATCA TATGCATCAT NCAAATAGAT 
    GACCGNAACA TTAAAATGNG GAAAAGTAAG TNGCNTCTCT ANNAACATGA 
    GCANCAGAGG NGCCATGNNN NAAACNGATC CCAANAGNAN ATANCGCTCN 
    CAANANANAN GCNCTCNCNG NANTANNNAT GNNACATACA TGACNGNCTA 
    AAACNAGGAT NNGAACGAGT ANTGGGGNAG CNAGATNNCN CNAANNACAN 
    ANCCNANAAN NACANNCTNA NGAANNNTGA CNGNNCTNCG NACANANAGC 
    CCNANGNGGA NNNAACAGTN NNTCANNGNN ANACGANGGN NNCNNNNANA 
    AGNAAANATT NCTACNCGNN NAGNNCNGNG GTNNCNCCAN GGGGANANNG 
    NGNNNCGANC NGNNNNGTNC NANNNAGCNA NNAAANAAGA GNNNNNNGAN 
    TTATNGNANG ANNNNNNGCN CGNGCGACGN NNNANNNNNC GAAANTAGNA 
    NAGNCAGNGN GAGANGNNCA NNNNNCCTNN NCAANNAGAN AAGNCNCNAN 
    NANATTNAAN GNANNNAGAN NAAANCANNG NTCATANNNN ATANGNAGGN 
    GNTNNGNNAN NCNACNGNGN CAGAGNNAGN AAAAGNGGCA ATNNNCANGG 
    CNNAANGTAG ANNANACNNA ANNAAAANNA NAACAANGNC NCAACAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26555669 [Map]; Strand: w
      • AT5G66530.1 - [+] show detail - Galactose mutarotase-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66530.2 - [+] show detail - Galactose mutarotase-like superfamily protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 12-1011-1 - 3-prime edge 
    GCGTTTAGTA TTCAATTTCA TCGACCCAAA TCAAAATCTC TATTCAATCC 
    TTTTCCTTCT TCTTGTTGCC CTAGTACGAG AGGACCGGGA AGGACGCAAT 
    ATATAGGATA CCTAGATAGA GAGTGACTTG AAGGAGAGAA AAACAAAAAT 
    GGCTGATTGT TTCCNGTCTC TAACTCTTTT CTCACTTTCA ATTCTCCCAA 
    TCAGCTCCGA TTTAGCCGGT AATATTCTTA CTGCATTTTG TTTTTTTTCT 
    TTTGGTTTCG CTTCTAATGT CTCTACCTTG CATTTGATCC ACACAAAAAA 
    AAACTCGATC N

AT1G63510.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Cys (anticodon: GCA)
Link
InterPro Scan - TAIR

AT1G63520.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3527)
Computational Description
Protein of unknown function (DUF3527); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT4G11450.1); Has 121 Blast hits to 121 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66530.1

Model type
Protein coding
Short Description
Galactose mutarotase-like superfamily protein
Computational Description
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66530.2

Model type
Protein coding
Short Description
Galactose mutarotase-like superfamily protein
Computational Description
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1).
Link
InterPro Scan - TAIR