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Mutant Lines
12-1041-1

12-1041-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19614843 [Map]; Strand: c
- AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
  Distance: 0; Region: exon1 (5UTR)
- AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
  Distance: 0; Region: exon1 (CDS)
- AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
  Distance: -934; Region: promoter

GATGTCGAAA TTGCCAGAAG GATTGAAGGC GACGGAGACT GCTACGTCTT 
CTGCCCTCCT CTTTCTTACA CACCACCCGG CGGTCTCCAA CGCCGGCAAT 
TGAACCACTG GGAACAGCGA TACNGTGTCT CGGCGATGGG ATAAGCCACG 
GGAGAAGAAC TGCCTTTGTT GCCATTCACA GACGCTATCT CTCTTTGTGT 
CTTAGTCTTC TTTTTATCCT CTTCTTTTGG CCTTTTCTTC ATTTCTTTCC 
ATTTTATCCT TTTTTCCTTC ACCGCACAAA TACATATATT TTGCTGTCTG 
TCGTAAAGGT TTCAAATGTT AAGCAGAATG CATTTCTTCA ATCGTTCAGA 
AAAATGAAGA GCTCTCTTCT TTAATGTGGA ATGTTTTCAA CTCAAGTCAG 
CCTCCTCGGT CTCATGTAGA TGTAGGCATT GTCGAATCTC CTTCACTGTT 
GGTGAGGTGT TTCAGGAGCA TCTGCAAGCT

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19614960 [Map]; Strand: c
  - AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
    Distance: 0; Region: exon1 (5UTR)
  - AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
    Distance: 0; Region: intron1 (CDS)
  - AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
    Distance: -817; Region: promoter
Flanking Genome Sequence: 12-1041-1 - 3-prime edge
```
TGACATCTCT GCCTTCGAGA ATGACCAAGG TTCGTACTTG CTCAATTGAT 
TCAGAATGAT AAATAAAAAA AGGCTGCTAC TAATTAATTA TGTGAAAGGC 
GTAGCAGATT CAGATAAAGT GGAACCTCCG ATGCCTCCAA CGACCGGCCG 
GTACGAAGTA GTGATCGACA ACGACTCAAT TGGGCGGCTT GACCTATCCC 
CGTTTCAGAG AGCCATCGGC ATAACCTCGC CTGATGATTT TGGTGTAGCT 
GAACCAAAAC GGTATTTGGA TCGAACCATC GGATTCACCA TCAATTACAA 
GAGAGAAGAC CCCGGGGATC
```

AT2G47910.1

Model type: Protein coding
Short Description: chlororespiratory reduction 6
Curator Summary: Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description: chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 166 Blast hits to 166 proteins in 69 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47910.2

Model type: Protein coding
Short Description: chlororespiratory reduction 6
Curator Summary: Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description: chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47920.1

Model type: Protein coding
Short Description: Kinase interacting (KIP1-like) family protein
Computational Description: Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT1G03470.2); Has 342 Blast hits to 342 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 4; Plants - 321; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR