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12-1145-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11184880 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -366; Region: promoter
    2. Chromosome: 5; Position: 11185884 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1370; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4659; Region: intergenic
    3. Chromosome: 5; Position: 11186386 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1872; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4157; Region: intergenic
    4. Chromosome: 5; Position: 11186889 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2375; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3654; Region: intergenic
    5. Chromosome: 5; Position: 11187391 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2877; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3152; Region: intergenic
    6. Chromosome: 5; Position: 11187893 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3379; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2650; Region: intergenic
    7. Chromosome: 5; Position: 12824263 [Map]; Strand: c
      • AT5G34358.1 - [+] show detail - transposable element gene
        Distance: 21415; Region: intergenic
      • AT5G34376.1 - [+] show detail - transposable element gene
        Distance: 13575; Region: intergenic
    8. Chromosome: 5; Position: 12866982 [Map]; Strand: c
      • AT5G34412.1 - [+] show detail - transposable element gene
        Distance: -25145; Region: intergenic
      • AT5G34431.1 - [+] show detail - transposable element gene
        Distance: -21212; Region: intergenic
    9. Chromosome: 4; Position: 3054787 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2013; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6188; Region: intergenic
    10. Chromosome: 4; Position: 3055285 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2511; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5690; Region: intergenic
    11. Chromosome: 4; Position: 3057246 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4472; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3729; Region: intergenic
    12. Chromosome: 4; Position: 3057744 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4970; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3231; Region: intergenic
    13. Chromosome: 4; Position: 3058740 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5966; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2235; Region: intergenic
    14. Chromosome: 4; Position: 3059238 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6464; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1737; Region: intergenic
    15. Chromosome: 4; Position: 3059736 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6962; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1239; Region: intergenic
    16. Chromosome: 4; Position: 3060234 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7460; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 741; Region: intergenic
    17. Chromosome: 4; Position: 3060732 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7958; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 243; Region: intergenic
    18. Chromosome: 3; Position: 13593645 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 9671; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -8155; Region: intergenic
    19. Chromosome: 3; Position: 13711514 [Map]; Strand: c
      • AT3G33084.1 - [+] show detail - transposable element gene
        Distance: 31344; Region: intergenic
      • AT3G33076.1 - [+] show detail - transposable element gene
        Distance: 28217; Region: intergenic
    20. Chromosome: 3; Position: 13715056 [Map]; Strand: c
      • AT3G33084.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT3G33076.1 - [+] show detail - transposable element gene
        Distance: 24675; Region: intergenic
    21. Chromosome: 3; Position: 13728369 [Map]; Strand: c
      • AT3G33084.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT3G33076.1 - [+] show detail - transposable element gene
        Distance: 11362; Region: intergenic
    22. Chromosome: 3; Position: 13788186 [Map]; Strand: c
      • AT3G33076.1 - [+] show detail - transposable element gene
        Distance: -32768; Region: intergenic
      • AT3G33069.1 - [+] show detail - transposable element gene
        Distance: -14987; Region: intergenic
    23. Chromosome: 3; Position: 13815575 [Map]; Strand: w
      • AT3G33069.1 - [+] show detail - transposable element gene
        Distance: 9622; Region: intergenic
      • AT3G33080.1 - [+] show detail - transposable element gene
        Distance: 1067; Region: intergenic
    24. Chromosome: 3; Position: 13836750 [Map]; Strand: w
      • AT3G33100.1 - [+] show detail - transposable element gene
        Distance: -3681; Region: intergenic
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: 4901; Region: intergenic
    25. Chromosome: 3; Position: 13838776 [Map]; Strand: w
      • AT3G33100.1 - [+] show detail - transposable element gene
        Distance: -5707; Region: intergenic
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: 2875; Region: intergenic
    26. Chromosome: 3; Position: 13849699 [Map]; Strand: w
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: -7235; Region: intergenic
      • AT3G33106.1 - [+] show detail - transposable element gene
        Distance: -21410; Region: intergenic
    27. Chromosome: 3; Position: 13852202 [Map]; Strand: w
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: -9738; Region: intergenic
      • AT3G33106.1 - [+] show detail - transposable element gene
        Distance: -18907; Region: intergenic
    28. Chromosome: 3; Position: 13857098 [Map]; Strand: w
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: -14634; Region: intergenic
      • AT3G33106.1 - [+] show detail - transposable element gene
        Distance: -14011; Region: intergenic
    29. Chromosome: 3; Position: 13861276 [Map]; Strand: w
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: -18812; Region: intergenic
      • AT3G33106.1 - [+] show detail - transposable element gene
        Distance: -9833; Region: intergenic
    30. Chromosome: 3; Position: 13866872 [Map]; Strand: w
      • AT3G33103.1 - [+] show detail - pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match ...
        Distance: -24408; Region: intergenic
      • AT3G33106.1 - [+] show detail - transposable element gene
        Distance: -4237; Region: intergenic
    31. Chromosome: 3; Position: 14178545 [Map]; Strand: w
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -6384; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 17196; Region: intergenic
    32. Chromosome: 3; Position: 14182501 [Map]; Strand: w
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -10340; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 13240; Region: intergenic
    33. Chromosome: 3; Position: 14208356 [Map]; Strand: c
    34. Chromosome: 3; Position: 14213176 [Map]; Strand: c
    35. Chromosome: 3; Position: 14214698 [Map]; Strand: c
    Flanking Genome Sequence: 12-1145-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTGATCCTAG TACTACTCTC GCCCAAGCAC GCTTCACTGC GGAGTTCTGA 
    TGGGATC

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33069.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 1.6e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33076.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 4.2e-187 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT3G33080.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30650.1)
Link
InterPro Scan - TAIR

AT3G33084.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.6e-186 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT3G33100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33103.1

Model type
Pseudogene
Computational Description
pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match of 82% identity and 9.7e-30 P-value to GP|28301938|gb|AAO38831.1||AC091532 putative cytochrome c oxidase assembly protein {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT3G33106.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G41345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-18 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G41762.1

Model type
Protein coding
Computational Description
unknown protein.
Link
InterPro Scan - TAIR

AT3G41979.1

Model type
Ribosomal RNA
Short Description
rRNA
Computational Description
5SrRNA
Link
InterPro Scan - TAIR

AT3G42047.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G34358.1

Model type
Transposable element gene
Short Description
transposable element gene
Link
InterPro Scan - TAIR

AT5G34376.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.4e-31 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G34412.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 8.7e-05 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT5G34431.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR