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12-1171-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flowers::petal)

seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)

whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Flowering & Growth::late flowering)

stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Branching::bushy)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20645449 [Map]; Strand: c
      • AT1G55325.2 - [+] show detail - RNA polymerase II transcription mediators
        Distance: 0; Region: exon21 (CDS)
      • AT1G55325.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 12-1171-1 - 5-prime edge
    CCTGCTGCAG AACTTGAACG AAAAGACACT GCAGCCCTTT TGTATCCTGT 
    CTACTGCTAA TTCCACCAAA GGGAAATATA TGTGTGTCAA GCAACTCACC
    CCTGGCATCC GTCCAGATGC TTTACAAGCC ATCTCCAGTC CTCTGTCCAA
    CCGTAGCAGC AATGTAAACT TGGAATAGCC TTTCCTTCAA GCTGGGATAC
    ATCCCCCTGG GAGCTTGATC CCGATGTTAT ACCTTCCATT GAATTCATGC
    CAGGTCCAGA ACCTCTGCCA CCATCCTCGG GTATTGGCTT GGAAGACTCA
    GAACCCAAGC TGGTGAAAGT AGGTGAAACT CCACGCTCCA CAGAACCAGG
    CTCGGAAAGA ATGAAAAGTG GTTCAAATAA ATAGAAAATT TCATCATTAA
    GGTAAAAATC TCCATTTCTG TTTGAGTCGC AGCTTAATCC TCCAGATN

AT1G55325.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.
Computational Description
GRAND CENTRAL (GCT); INVOLVED IN: regulation of development, heterochronic, regulation of radial pattern formation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55325.2

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.
Computational Description
GRAND CENTRAL (GCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med13 (InterPro:IPR009401).
Link
InterPro Scan - TAIR