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12-1174-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29002086 [Map]; Strand: w
      • AT1G77180.1 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon1 (5UTR)
      • AT1G77180.2 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon1 (5UTR)
      • AT1G77180.3 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-1174-1 - 5-prime edge
    TGTGCGAGGC GGCGCAGACC GATGAAGAAC AACGAACGGA AGTGAAGCCT 
    TTTTCTGGGG AAAAAAGAAA TCGGGCGTGA AGCCTTTTCT AGGGTTGATA
    GGATTAACAA CAAAAAAAAG GAATCAATTG TCTTATACGC AGTGTCTATG
    TAAGTCGGTT TAAAAATAGA CGAAAAAACG AAAAGGATAA CGTCGCCTGA
    GAGATTCGAA CTCTCGCGGG CAGAGCCCAT GTACTTAGCA GGCACACGCC
    TTAACCACTC GGCCAAAGCG ACTTATTGTT TTTAAATCGA AGAAAGTTAT
    ATATATAACT ATAGGTGTTG GCTTTTTGAT ATATACAACA ATTCTGAGCA
    TCTCATAATT ATTTGCATTG TCCTTAATGA AAATCCGTCT CAAACACATT
    CCCATAGTTT CGTTTAAAAT ACTGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29001970 [Map]; Strand: w
      • AT1G77180.1 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon1 (5UTR)
      • AT1G77180.2 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon1 (5UTR)
      • AT1G77180.3 - [+] show detail - chromatin protein family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-1174-1 - 3-prime edge
    CTCGCACATC GTTTCACCTT TCTCAGAATC TCTCTTCCCG TCGATTAGTT 
    TCCTCAGAGG TTAGCTTCTT CGATTTCTCA GATTCAATTC TGCTTTTTGC
    TTTCCTCCTG TTGTTTTTAG GTTTTTGTCG ATCTCTATGT TCAGCGATTC
    CTAAACCCTA CTTGTTTTCC GCTCTATTGT AGTGAATCCA ACCCAGATTT
    TTCAGATTTT AATCGGAATT ATTCGGGATC TAATGCTCGC GTCGAGTTTA
    TCGCTAGAAA ACCCTAATTT CGGAGGATCT GTCACTTTTA TTATCAGAAG
    CT

AT1G77180.1

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 9534 Blast hits to 6488 proteins in 453 species: Archae - 14; Bacteria - 426; Metazoa - 4688; Fungi - 1154; Plants - 570; Viruses - 47; Other Eukaryotes - 2635 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77180.2

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77180.3

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015).
Link
InterPro Scan - TAIR