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12-1285-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 621076 [Map]; Strand: c
      • AT1G02813.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT1G02816.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -385; Region: promoter
    Flanking Genome Sequence: 12-1285-1 - 5-prime edge 
    CCTNNNNAGC AGCGCCAACG ANGGAACTCG ANANTCGGTC TNCCGGCACG 
    NANACACCTC NGAGATGTNN ATGNNGAAGA AAAGAACATA TGACGCTTAC 
    GCCTATCAAC CNTATGACCC GGTCCTCTNG NNNTGATGCC NGGAGATTAC 
    GGGTTNGNAT TTGACCTTGT ACAGAGTCTA TGGAGAACTG ACACCGTGGT 
    GTTGAAACAG GACTTTGAAA ACGCCAGTTC TTCGGTTTAG GTCGTAGTCG 
    TGGACACCTT CTGGTAATAT TCCTCGTGGT AAGGTGTAGT TTTCGAGAAC 
    CTGGTAGACA CTTCGCTTTT TTTGGCCGGA GACGGATACA GAAGTAGAGA 
    GAAGAAGGAG GAAGATGATG AAAATGGACA TTGTTTCTGT TTTAACTTAT 
    CTCTGTGTTT TTGCTTAGTT TAGTGTCTAA TCTAATCGTA AGAATTTTCC 
    TTGAATCTGT TTAANAAGTT GGTTTTGGGA TGTCTTTGTG TGTTTAGTTA 
    TAANTNNANA ACGATGAGGG ATTANTTGGG GTTTANNGAC NCTGGATCGG 
    NCCGNNNAAG GAATNAACNG NNNNNATTTN NATNAANNTA NTGCTCCNNN 
    GNTNANANNG GNNCANNNAC NNNNNNNNTN NNNCNNGNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 621187 [Map]; Strand: c
      • AT1G02813.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT1G02816.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -274; Region: promoter
    Flanking Genome Sequence: 12-1285-1 - 3-prime edge 
    TTCGGAGGAG TTCTCGAGCA AGTATTTCGT GGACAGCCCA AAGTGTGGTT 
    GTGGGTTTAA TTGTTATAGG CCTATCTCTT CCTCTTAAAG CCCATGGGCC 
    TTAAAGCTGT TATGATTATA ATATATAAAA TAAACACNGG CCTCGAAGCN 
    TGTTATGATT TATGAATATA TAAAAATAAA CACTACTGTN GGTTNAAGCC 
    CAAAATTAGC CCATGTGAAG AATTTTGTTT GTTTTGAAAC AAAATGACAA 
    AAAGACACCT CATGGGCTTA CTGATGACAC GTGTCGAGTT GTTCGGTTAA 
    AACGATGTCG TGTTTATGGT CGCTTGATCT GATCAGATGT GCCAGCTATA 
    CAAAAGTCTC TCACGTCTCT CCCAGAAAAC TCTTATTTTA TCGCCGAGAA 
    AGTGACGGAA AACGAAATCC AAACGGGATA ATAAACCTAA AACCTAAATT 
    AGTGATTTAG CTACGACTCC TAAAGATTCA AATTTGGGTT ACATCGGACG 
    AATCATGACT CTGCTTCCGA TTTCAATCTT CTTCTTCTTT TTATTTTGCA 
    TTCCTTCGCC ATTAATCGCC GCCGCTAACG ATGACGATAT ACCGACGGCG 
    TACACTCTCC TCCAAAGCTA CAACTTTCCC NTCGGGATTC TTCCTAAANG 
    ANTGGTGTCN TATGATTTAN ATAAATCTAC TGG

AT1G02813.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, cauline leaf, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02360.1); Has 501 Blast hits to 500 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 500; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02816.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR