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12-1315-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 106974 [Map]; Strand: c
      • AT2G01175.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -758; Region: promoter
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (3UTR)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 12-1315-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATT 
    AGTCTATTGG ACGAGATTAT TCGAGCGACC CAAGCCTCTC GGACACCAGA 
    AAAACGTCAA TTTCATGAAG AGTGGATTTA CAAAAAAGTA ATGGTACAAG 
    TAGAGTTTTG AATACACATA CAGTATGTAG CTACACCATT CACAATCTCA 
    CGACGACGGC CAAATCAAAA TGAAAAACCA AATAATGAAT CAAATAATAA 
    GAGAGGAGGA TCATCTGGGA GCGGTGGAAG TGCCAGATTC CATGTTTTCG 
    AGAGATGTTG AATCCATCTG CAGAGACATA GCCCTCAAGG CATCTCCGTT 
    TTGGGAGGAG GTCACAGGGA CTCCTCGTTC TTGAGCTGCC TTGAAATAGG 
    CGTAGGGACC CCATCCTTCT TCGTGGTAAG GGTTGGGGTA GAACTGACGG 
    TAGCAGAAGG CGGCTACAAG GGTGCCAATG AGAGCTCCTG CGAAGACATC 
    TTGCCAGTGG TGCCAGTAGT CATCCACACG AGATATCCCC ACAAGACAAG 
    CGGCAAGCAG AGGGAAGATC ACCAGGCNGN GNNTANCNCC ATGNCCTTCA 
    TTGTTGAAGG CCTTGATTTT GCCANAGAGG TAAAGGGAAA GGAATGTAAG 
    CCCCGCAAAG GACCAGGAAG TGTGTCCGCT CGGGAAGCTC TTGTGGCCTT 
    CCTTGACCTN ANCTGCCTTG CCGNGGCNTA CCACACCTNC CAACGCATNA 
    TACAGNTNTT TG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 106900 [Map]; Strand: c
      • AT2G01175.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -684; Region: promoter
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 12-1315-1 - 5-prime edge 
    AATACGGCTC TAGTGAACAC GGTATTTACA TGTTTGTGAT CTAAACTGAA 
    ATCAGTTATT TCTTTATTCG TAATCATTCT TGGGTTAACA TTTTCTCTTA 
    TAATCTGATG GTTGAAGATG GCAAAGCCAT TGTTAGCATA GCCATAGCTG 
    GTTCAATCAT CCACAACACT AAATTACTCG AGCTCTCCAC ATGCGTAATC 
    TCTCTTTCTC TCTATTTCTC CCTTCGTTTC TCTCATTCTT CTTCTTCTTT 
    TAATTTCTGG GTAGCTATTA TTTTAGTGTA GAACAAAGTT TGACACTTGT 
    GCTTACGCAC ATGCGCTGCC AACTATGCTG CAGGTATTAA ATCAGTTCTG 
    AAAATATTGA AGCACAACTG GAAACCGTTT CTTTTGTGCA CTCAAGATAT 
    TAAAATGGTT CTCTGTTTCT GAAAATATTG GAACAGAACT GAAAACTGTG 
    TTTTTGTCAT GCTAGCGTAT TGTTATATTG TGTTTTCTTG AGCAAATGAT 
    GATACTAGCA ATTCAAATTT CATCTCTTCT CTTTGTTATT ATGAATTTCA 
    TGCTTGTATT GGAAGACATT ATTTTGCAAA CATTTGATTT TGGTTTACTC 
    AAGGACCCAT TGTTTCTTAA CCATTGGAGT AGAAAATTTG TTAAAGACTC 
    TTATTANTTT CTTAACTTAC AAAAAGCAAA ATTTTANTAA AAAAAAT

AT2G01175.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR