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12-1377-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 50381 [Map]; Strand: c
      • AT4G00130.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: 1313; Region: intergenic
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 785; Region: intergenic
    Flanking Genome Sequence: 12-1377-1 - 5-prime edge 
    ACCATGGTCT AGTTTTCTCC TAAAACAACC TGGCCTCTTT ATGAACGCAG 
    GACGCGGTCG TTACAAGTCT ACCCCCCTTA AACTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2363253 [Map]; Strand: w
      • AT4G04655.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-1377-1 - 3-prime edge 
    ACCATGTTCA AGAAACGGAC TAAAATACTT AGTCAGAAGA ACGAGAAAGT 
    TCAAAGCT

AT4G00130.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G25210.1); Has 94 Blast hits to 94 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04655.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.0e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR