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12-1454-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8914470 [Map]; Strand: w
      • AT5G25600.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion bin...
        Distance: -415; Region: promoter
      • AT5G25610.1 - [+] show detail - BURP domain-containing protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 12-1454-1 - 5-prime edge 
    ATGTATATGT ATGTATATTC ATAACCAAAA CATCCCAAAA GATAGATTAT 
    CTGAAACGTA ATTATACATA ACCCACAATA AGATAGAAAA CAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8914354 [Map]; Strand: w
      • AT5G25600.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion bin...
        Distance: -299; Region: promoter
      • AT5G25610.1 - [+] show detail - BURP domain-containing protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 12-1454-1 - 3-prime edge 
    ATATACATAT AGTAATGCGT GGTTTCCATA TAAGAGTGAA GGCATCTATA 
    TGTTTTTTTT TTATTAACCT ACGTANCTGN CTTTTGGGGN CTGTATCTNG 
    GGGTTTTGCA AAANCCTATA ATAAAATTAN ANCTTGAAAN GTTNCCATTT 
    CTATGTTTNG GCTTAATNGA CAGGAAATTT TAATTTTCAN CAAGTAAACC 
    ATATTAATNG GNGATCCCCA ATATGAGNGT TNAAAACATT TNGTAAAATN 
    AATTTTATTA CTAGTTNAAT ATNAGNGTTN GAAANAGGGG ATATCGCNCC 
    CTTTTTCACT TCTNATAGGG NCTTCTTTTC TTNACTTCTT CTNGTTCCCN 
    GANGGCTGAN GAAATTNGGC NTGATNTNCA GTNCATGGTT TNGGGNCGGG 
    ANNATCCAAA ACTTTTTGTN CCTCAGGCAC CTNATGGNGT TGTTGTTGCT 
    GGCANCAAAC TGAGTCTTAT TGCAANACCG TTNAACATCC NTGCTCAACA 
    CCTAAAAAAG TNCTNNGGGC CTNGCCTCCC AGCNGGGGTN TGGCTTCTNG 
    NGTCCTTGGC CNCATCATTG AGGATGGGGN CCTCCAGTTN CCGTTTTCCC 
    CCCNGGNTNT TGACTTGGNC TTNGGNCATG CCNGAANAGG CCCNANGGGT 
    TATTCAACCN AAGGGTTNAT NNCNTCTCNC AAAAATGGGG AANACNANNC 
    CCNGGCCGGA CNTTTTCTAC CNATTTNNAN CNTGGGGTCN AAGTNAAANG 
    CCCNCCCACN C

AT5G25600.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion binding (TAIR:AT5G36228.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25610.1

Model type
Protein coding
Short Description
BURP domain-containing protein
Curator Summary
responsive to dehydration 22 (RD22) mediated by ABA
Computational Description
RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR