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12-1493-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26960956 [Map]; Strand: w
      • AT1G71692.1 - [+] show detail - AGAMOUS-like 12
        Distance: -5829; Region: intergenic
      • AT1G71695.1 - [+] show detail - Peroxidase superfamily protein
        Distance: -3293; Region: intergenic
    Flanking Genome Sequence: 12-1493-1 - 5-prime edge 
    CGGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATAGT CAGTCTAGAT GTGAATATGT GATGAAGGAA 
    AATTATAACT ATTTGATGGT TTCTCCATAA ATCTGATTGA TTTAATTAGT 
    GACAGACATG AGAGAAAATT ATAATTATAA GTGGAAGATA CCTTTTTTTT 
    TTGATCAAAA GNGGAANATN CTTAAAAAAA TNGATTCGTN TCCCAAAAAT 
    AAGTTNCCAT ANATTNGTNG GGANANNCTT NTNGTCTAGT NGNCTNGATT 
    CCANCATNTA ATNCNAATTN TGAAATANTT NGTAAAAGGA TNTGATNCCC 
    AAATNTAACT TNNGTCANCA GTTTTTNTTA TAAANGTTTT TTTTTAAAAN 
    CTNGTNANCA ATNGATNTCG GNTNCTNTTN TNCAAAACAN ANATTTTTTT 
    TTTTTTTTNC TNNCCANANG GGGGTGNGGG NNNNNGTAAA NTTNTTTCNC 
    AAAAAAAAAN NCTCCACCNN CCCCNCCGNT GNGGGTCCNC NCACANNNAG 
    GGGGGNGGGG GNNTCCCCNT TNNNGNAAAN NAAAAANNAN NCCNGNGGCG 
    GGAGGNNCCC NGNGGGGCCC TTNAGGGNGN GNNGGAGGGC NCTNGNCGGN 
    GCCGGNNGGG NGANGNNCGN NGANNANANC GNNCNGNANN NANGCGNTGC 
    NANGCNTGTA AGNGNNGGAG NNNNNGNANG NNGNANNTNG NTCGGAGTAG 
    GGNGGANNGN GCGGCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26960912 [Map]; Strand: w
      • AT1G71692.1 - [+] show detail - AGAMOUS-like 12
        Distance: -5785; Region: intergenic
      • AT1G71695.1 - [+] show detail - Peroxidase superfamily protein
        Distance: -3337; Region: intergenic
    Flanking Genome Sequence: 12-1493-1 - 3-prime edge 
    ATCTAGACGC ATTGTGGAAA CCATCCAAAA TCAGTCATCT CAATACGACT 
    CATATAGGTG ATGATGTTCA ATATTCTAAC GCACTGTGTT TAGTTTATCT 
    TCCACCAACT CCCTCACTCT CGATGCTGAA AATATATTGT AAAACACACC 
    CAAAATCTTG ATCTCGTTCT CGCTTTCTAT ATATATAACC ATATTTTTTC 
    TCTTTTTTTA AAAAAAAATC TTTTTTTCTT AATATAAAAC TTCAGTTCTA 
    CAAGAGTACT TAAGCTGCTC TCTCATCAAA CTTGCATTTA GTTACTATCA 
    ACGTTGAGTT GGACAGACTA GTGGTTTAAA TGCAGGGGTT AGACCCATAT 
    GTTTACTAGT TCGATTTCTG ATAGAAAATA TAAGGTATTA ACAATAATTG 
    ATCCTGAACC GTGGAGGAAT TAAAGCT

AT1G71692.1

Model type
Protein coding
Short Description
AGAMOUS-like 12
Curator Summary
Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.
Computational Description
AGAMOUS-like 12 (AGL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, root development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1); Has 6551 Blast hits to 6549 proteins in 840 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 300; Plants - 5564; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71695.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR