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12-1519-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13877554 [Map]; Strand: w
      • AT4G27860.1 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 1028; Region: intergenic
      • AT4G27870.1 - [+] show detail - Vacuolar iron transporter (VIT) family protein
        Distance: -1369; Region: intergenic
    Flanking Genome Sequence: 12-1519-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TAATGGTGAT GGTGATTGAT CACAACCATA 
    TCATCGAGAA ACTTCACGTT CAAACGTAAA AGACGAGACC ATTATCGAAA 
    CAAACTAGTA TGAAGAAGTT TTTATAGTTT TTTTTGTTAA TGAAGAAGTT 
    TTTTTTTNGG GNGNGAAAAA GTTNTNTNTC TGANNGCAAA TTNTAANGCA 
    NGGAANGNGT NTCTACCCAN TTTNGTNGAT AAAAANATTA CCCNTACCCN 
    GANTNAAATN NGGNNGTTTT TTTTTGGGAA AATNAAANTG GGGNGTTNTN 
    NGTAACCANN ATAAAGTAAA NANGGNGNNC NNNNNGNAAG GGGCCTNNNN 
    CACCAANCNN NTNNCTNNAA AAATTTNCNG GNNTTTTTNT TTCGNGNTTN 
    ANTTNNAAAA NNCCNNTTTN TTTTTAAAAT TTTNGGCCNN CAAAACCAGG 
    GGGGGGGGGG NAANNAANCA TTANGGNANN NGGGGGGGNA AATGGGGNCC 
    NNNNANTGGG NTTTNATAAA AAATTGGGGC NNCCCNTTNG GGTTGGNNGN 
    NAAAAAAATT NCCGGGCNGG GGNNGNNAAC NNCCNCGCCC CCNAANNNGN 
    GNGNNNNNGN GNGGGNGGGG GNTCGNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13877550 [Map]; Strand: w
      • AT4G27860.1 - [+] show detail - vacuolar iron transporter (VIT) family protein
        Distance: 1024; Region: intergenic
      • AT4G27870.1 - [+] show detail - Vacuolar iron transporter (VIT) family protein
        Distance: -1373; Region: intergenic
    Flanking Genome Sequence: 12-1519-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTT 
    GTATATATTC GTTTTCNTNC GTTGGTCAGG AAAAACTGAA AGGAAATAAG 
    AAATGTGTCA CATAGATACT TAGTGACACA ATATTTGCCC AAATCCCCAT 
    GATTCCTAAA ATCTTAACCA TTCTATCAAT AATACCACCT AAAATAATGA 
    TATATAACCC CAAAAGCACG TTACTAACAT GCTTATGTTG TGTTCAAACT 
    AATTTGTGTC ATCATTTTTA ATTAAAATCT TAACTCTATA TTAGAATCGT 
    GTAAGAATGT AGGTTGAATT TAATTATATG ATCGACTCAC TCAATATGAT 
    GAGTCATGAA TGTGAACGTA ACCTTGAGTT CACATGGATT TATAATTTTA 
    TATCATATAT AATAATTGTT AGGTATTCGC ATTAGATGAT CCCATACGAG 
    TAGAAAGAAT CAACAAGATG AAAATAGTAC ACGTTGGTTA AACTTTAGTT 
    CAAATTAGAT ATTAAACTGT AGCTTCTGGA ATGGCACAAA GTGCCAAAAA 
    CTCTCATCAT TTGCTTAATG TAGTTGATTT TTTTTCGTGC TGAATAATTT 
    TTGCTTGTTT ATGTTTTCAC TCATCCCTGA ATTTGATCCA TGATTAAAAT 
    GAAATAATTT AACCAAGCGT TTTTCATGTG ATGCCATTTT TCATCAACTT 
    TTTCTTATTT TCTTTGATTC TTCATCATTC AGTCACCGGA ATTTTTTCCC 
    CCTTTGCTGA TGATACATA

AT4G27860.1

Model type
Protein coding
Short Description
vacuolar iron transporter (VIT) family protein
Computational Description
vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27870.1

Model type
Protein coding
Short Description
Vacuolar iron transporter (VIT) family protein
Computational Description
Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.2); Has 285 Blast hits to 248 proteins in 70 species: Archae - 2; Bacteria - 30; Metazoa - 59; Fungi - 10; Plants - 112; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR