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12-1584-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23068136 [Map]; Strand: c
      • AT1G62360.1 - [+] show detail - KNOX/ELK homeobox transcription factor
        Distance: -6414; Region: intergenic
      • AT1G62370.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -4439; Region: intergenic
    Flanking Genome Sequence: 12-1584-1 - 3-prime edge 
    ATGGTGTTTG TATTTGTGTC TCTCGTTCGG GTGGTTTCTT GCTATCCTCC 
    ATGTTGGATT GTTACTGGTT TAACATCAGT ATGAGTTCTT TTTGATCTTA 
    TTGGTGCTTC CGATGTTCAC TGCTTCTTTC AGGAACCTTT GTAAGAGTTT 
    CTGGTTCTTT TGCGCAATTT TAGTGTTTAA ATTTTCATTT TCCTTTAAAG 
    GTTGATCTTT TTTTTTANAT ATTTTGTCTT TTTGTTTTTA TTGTTGGTCT 
    AAATAGTTTC TTCGTTTGGT TGGAGCTTAN CTTCCCTCTT TTGGTCTTAN 
    TTTCTGGANA CATTTTGTTG GTCTGCCGGC GTTTGTATTT CAAATGGNAT 
    TCTACCTTGA ATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23068020 [Map]; Strand: c
      • AT1G62360.1 - [+] show detail - KNOX/ELK homeobox transcription factor
        Distance: -6298; Region: intergenic
      • AT1G62370.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -4555; Region: intergenic
    Flanking Genome Sequence: 12-1584-1 - 5-prime edge 
    AACACCATCA CACATCACCA ACCAGACCGA AATAGCAAAA ATACTAGAGA 
    CAAGGCAAGA GCCTTAGAAA TCGACTAGAG ATAAGCCAAT TAAGATCACT 
    AGTTCTTACA CGCGGTTTCA AGTTAGTTCC GAACCTCAGT TTTTAAGAGG 
    TTACAAGTGT CCAATATTTA ATGCTAACGA CAGTGATCGC TAGACGTAGT 
    AATACTAGAT CTCGATTAGG GTATTACTAT TACTATATTC TCTAAACATG 
    ATGTTTTCTT CTCAAAATTT TGCACCATTG GAGATCTTCT TTTCAAATAA 
    AAGAAATATT TACTCTCTCA AACAACCATT TTCATCCAAA TAAGAAACTA 
    ACAGATTTTG CCTTACCCAA ATTATCTTAA TATATATTTT GATATTATTT 
    TTTCACAAGC ATATATTTGA TAATTTATAT CAATATAGTG AACACATTAA 
    AACATATGAA CTACCACTAA ACATCTGTTA TATGATACAC AACAATATAG 
    AATT

AT1G62360.1

Model type
Protein coding
Short Description
KNOX/ELK homeobox transcription factor
Curator Summary
Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.
Computational Description
SHOOT MERISTEMLESS (STM); CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana (TAIR:AT4G08150.1); Has 6066 Blast hits to 6064 proteins in 384 species: Archae - 0; Bacteria - 0; Metazoa - 1706; Fungi - 298; Plants - 3900; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62370.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03965.1); Has 610 Blast hits to 610 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 27; Plants - 270; Viruses - 11; Other Eukaryotes - 83 (source: NCBI BLink).
Link
InterPro Scan - TAIR