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12-1589-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1034766 [Map]; Strand: w
      • AT5G03860.1 - [+] show detail - malate synthase
        Distance: -196; Region: promoter
      • AT5G03860.2 - [+] show detail - malate synthase
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 12-1589-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TCATCCAATA CCTCTGGCTC TGCATAAAAC 
    CTAAAACAGT TTTAGTTGTC ATGCAAATTA GTTTACTGAT TGCTTCTATT 
    GGATGATGAG ACCAAAACAT CCTTGTTAAC GGATTGATTC AGATAAAATC 
    TAGGCACNTG TTTTGGGTTC AATCCAAATG TTTTGAAATT TGGTCTTAAA 
    CTCTTTTTTT TTTTTTTTTT TTNGGAAANG GGGGGTNAAA CCNTTNNNNN 
    CCCNNNNNNN AANNTTGGNA AACCNNNNGG GGGNAANNTT NNTTTTTTNN 
    NNNNNGGGGG AAAAANNGGN AAAANNCNNC CCTTNGGGGG GGNNGGGNCC 
    CNGNAAAANC CCCCCCNNTT NNANTTTTTT TTNCCCCCTT TNNAAAAAAN 
    TNCCCCGGGG GGGGGGGGGN CNNGGGGNNC CCCCNNTNNG GGNAAANNNN 
    NNNCNGGNNN NNTCNANAAA AANTTNTTTT TNNAAAAAAN NNGGGGCNNN 
    TNNNAAAATN NTNNTTTNGG NCGGGGGGGN AANNCNNNNT TTTNCCCTTT 
    TNGGGGGNAA ANNNANCNNC CCCAANAAAA AAAAAANCNC CCGGGGCCCC 
    CCCCAAAAAT TTCCCCNCCC CNGGNNNCAA ANTAAAANGN GTAAANCCTT 
    TTNAAANCNN CTGNACNGGG GGGGNAAATT TTTTCNNNNC CGNGNNAAAA 
    AANNGAAAAA NTTTTTTTCT CCCNCNNGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1034771 [Map]; Strand: w
      • AT5G03860.1 - [+] show detail - malate synthase
        Distance: -201; Region: promoter
      • AT5G03860.2 - [+] show detail - malate synthase
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 12-1589-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ATGCGCANCG TNNTCATTGT TCCNGNNCTT ACTAGCTTGT TAGGCCCANA 
    ANAACCTATA TNTTTCTTGA NCTGCACGAC TATGAATGAT CTCGTTTAGG 
    CATTTCCTNG AACACTTGCN GTGCGTAGCA AAAANGNAAA NNTNNGGNAN 
    NGNTTTTACA AACNTNATNG NCCCCNTTNT ATGGATTATG TNCNNCCANC 
    CNTTTGGNCT TACCGGCCAC TTATCCAANT ACCAAANNCT AGCCAAGGAA 
    TCTANNNACC NAAATNGANT GGGGNAAGGG NNNNAANGCT NNNACCCCGG 
    NCNGTGANCN NGCCCGGGCN ACNGNACGAC CAAATCTTCG CCAAGATTTT 
    GACGAGAGAA GCTCTTAGCT TTGTGGCTGA GTTACAGAGA GAGTTTCGTG 
    GCCATGTGAA GTATGCCATG GAGTGCCGGA GAGAGGCAAG ACGGCGTTAT 
    AACTCCGGTG CCGTTCCTGG GTTTGATCCT TCCACTAAGT TCATCANAGA 
    CGGNGATTGG AGCTGNGCCT NCGTCCCTNC TGCCGNTGCT GACCGGANAG 
    TNGANATCAC CGGNCCGGNC NANAGGAANA TGATNNTNNN CGCTNTTAAC 
    TNCNGANCTA NNNNNTTNTG GNCNTNNNNT TTNANTNTNN NTNTNNCNNN 
    ANNTTNNNNG GNNNGGNNNG GNNNNNACCN NNNTNGGNGA

AT5G03860.1

Model type
Protein coding
Short Description
malate synthase
Curator Summary
Encodes a protein with malate synthase activity.
Computational Description
malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; EXPRESSED IN: seed, leaf; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03860.2

Model type
Protein coding
Short Description
malate synthase
Curator Summary
Encodes a protein with malate synthase activity.
Computational Description
malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465).
Link
InterPro Scan - TAIR