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12-1609-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16719069 [Map]; Strand: c
      • AT3G45555.1 - [+] show detail - RING/U-box protein
        Distance: -6060; Region: intergenic
      • AT3G45560.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 561; Region: intergenic
    Flanking Genome Sequence: 12-1609-1 - 5-prime edge 
    ATTCGATGTA CGCTCATCGA GCCAAGACAA TCAGATCCGT CTACTTGCGG 
    GGGGATTTCC CGTCAAGATA CAATGAACCA GATGACGTAC AACCATTCCA 
    CGGATTGCCC CGGAGATCAC CGTTCCNGGG AATCTANCCG NCACTCCATC 
    GGATATCTCT GCTCAGAGTT ATCGCCGTTT TTCTGAAGTC GATGCTGTCT 
    GTTTCTTAAC AGATCCGTCC GAATAGACCA GTTCGCCTCG GGGCCAATTT 
    CCCGGCAAAT CACAGGGAAT CTCGTAAGGG TTAATACATC TACGGATCGC 
    CCAAAGAGTC GTCTTTTCGG AGAAGTTGAC CTCGCCTTAA TCGAAGATAT 
    ACGCTGAGAG ATATAAACGT TTACCTCAAG CAAGTGCAGC CAGTCATGAG 
    ACCCAACTCT ATAAAACCAG TCAGCTTCGG GATCGTTTTC CTTGAAAATC 
    CTGATGAACT AGGCAATGAT ATACCTATCT ACAGATCGCC CCAAGAGTCA 
    GCTTTCTAAA GAAGCCGACC TCGCCTNGAT CCGAGCTGNC TATTAGGAGT 
    TATCATCACT TNTNTGCACT AGATNCNATT TNCCCTGACA AATNCCGAAN 
    CNGTNGGAAC AGCCAACTTT ACNAATNAAA NTNCNANCNA NCTNNANNNA 
    NNNGNAANAN ANNNTNNNNN NAGNNNAAAN NNNNNGNNNG GNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4222289 [Map]; Strand: w
      • AT2G10730.1 - [+] show detail - transposable element gene
        Distance: -2516; Region: intergenic
      • AT2G10735.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 1796; Region: intergenic
    Flanking Genome Sequence: 12-1609-1 - 3-prime edge 
    CATCGAATAC TTGGATGAAT GATATGCGAA GAGAGTTCTG TCTTCCCCAC 
    AGACGGCGCC AATTGTTGAA CCAAGGATTC ACACAATAGA TTTGTTTAGA 
    GAGGGAAAAC AAATCTAATA ATTTCTCTTC ATTAGGTATT CTATCCAAGA 
    CTCGATTATA AAAGAGGTTC TAATCTCTTC TGAAATACAT TAGGGTTTGC 
    TCAAGAACAG AAAAAGAATT AGGGTTTTAA AAAGGTATAG CTGCATCCAT 
    AATGGATTGC CTACGTACCC TGTGAAGGGA TCAAGCCATT CGTAGTTCTC 
    AATATGTATA AAGTTATGTG TTTCTTGTGA GTATCCAAAG ATCCCCTTTT 
    GTGAAGTCCC TAAGGCACTT TATATAGGAT C

AT2G10730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon
Link
InterPro Scan - TAIR

AT2G10735.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G45555.1

Model type
Protein coding
Short Description
RING/U-box protein
Computational Description
RING/U-box protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2546 Blast hits to 2530 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 1126; Fungi - 452; Plants - 617; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45560.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 537 Blast hits to 473 proteins in 76 species: Archae - 0; Bacteria - 6; Metazoa - 55; Fungi - 41; Plants - 391; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR