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12-1613-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10337066 [Map]; Strand: c
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -2495; Region: intergenic
      • AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 1657; Region: intergenic
    2. Chromosome: 2; Position: 51300 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -2950; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 7405; Region: intergenic
    3. Chromosome: 2; Position: 54281 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -5931; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 4424; Region: intergenic
    Flanking Genome Sequence: 12-1613-1 - 3-prime edge 
    CACGGAATGC CCCGAAAATT AGCTTTCAAA AGAAGCCAAT CTCGCCTCAA 
    TCAGAAATTT ACACTGAAGG TTATGACTCT TTCTTTGCAA CCAGCGAAAC 
    GCAGATGCTC ACTGCACGAT CAACCAAATT AGAAAGCAAA TTTCTAGCAA 
    TCCAAAAGAA TTTTCATGGC GATCTGCATA TCAATTTGAA GCCTCGAGGC 
    TCAGCTTTCT AGAAAGACCA ACCTACACCT TAACGTCGAA TT

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28380.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR