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12-1643-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 88487 [Map]; Strand: w
      • AT4G00210.1 - [+] show detail - LOB domain-containing protein 31
        Distance: -1592; Region: intergenic
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -1549; Region: intergenic
    Flanking Genome Sequence: 12-1643-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACT CGCAAACGAG CCATTGGTTG CGTCAGAACG 
    GTTACGTTCT TCATAAAAGT CACATTCGAC ACATGGCAGA TCATATATAC 
    GTGCCAATTT TTCCGGTTCT CTCAAATCCA ATCCCGGTTT CTTTCTTTTA 
    TGTTTTGATC ACCGGTTCTT CTTCTAAACC AACTTAGCTT TACTCATTTG 
    GTGATTATTA TTGGACCGTC GTAATCGTCA CTCTTTTCTT TTTTGAATCA 
    ATGATGTGAG ATATGTATAT TATACACGCA CACGTACACA CGTGTATTTG 
    ATCATTCTTG CCGTCACCAA ATTTTAAACT CATTTATCGT GTAATAATAT 
    ATTGGAGATC CGCACTGACT AGACTATACA TTACATAGAT CTTGTAATTT 
    CGGAAAGTTC AAATATTTGT GAAATATATG CACTAGTTGG AGTTTCCTTA 
    TTTGTACCTT AATCGAATAT TGAGTAAACA TGATTCCCTG ACCCAAATAT 
    AGATTGCGTA CATCAACTTA TTAATACCGT CAATAAATAC NAGTTTTTGC 
    ATATAATCAT TACATGGNCA TATGTAATAA ATCTAGTTGT TTTGGAAATT 
    GCATATTCTC TCCCTCCCTN TTTATCAATT TTACATNTNT NGTAGCATCN 
    GCAATATNTG NGAATTTGGT ACATTAANNA NNNNANNNNG NNTNNAANTN 
    TTTGGANAAN NATNAATAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 284857 [Map]; Strand: c
      • AT4G00695.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: intron4 (CDS)
      • AT4G00695.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon5 (3UTR)
      • AT4G00695.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 12-1643-1 - 3-prime edge 
    GGACAAGTAA CAGTGAGAGA GGGTTGCAAA ACCATGAGAC AACAGTTTTT 
    CCATACAAAG GCTGTTGGAA AATCAATGTA CGTTACTTTC CTTGCATCTG 
    GTTCCGACTA TTCATTTTCA TCCACTCCAA AATTATTGTC TGTTTTAAGC 
    ATCTTTGTTT TTTTTTTTTC GGANAGGGTT TNAACATCTT TGCTTGTTAG 
    CANAACATCT CTTCTTNTTT TTGCTATTCA TGAGTATGTT ACTCATACNC 
    TCAAAAATAT CTAACNAGNG TAATATTATG TATTANCNAG TGTTTTACAA 
    TTGACTGCNT GCATTTNANA ATTNTTTNTT GATNGANNGA ACAAAACTCA 
    AAAGGNNTAA AAANANTTAG TTCCNAATCG GCTGAAAACT TCNNANTTCC 
    NANAGTTCCG GNTTTNTTAC CGGTTNTACN CTTAACCATT NTNTAAANTG 
    GTNAACCNAT CTCTATNNAC GAACCTANAC CCTTGCNTGN NGTNAAAGAG 
    AANNTNGGTN ATNCCGTATG TNCTANCTAN AAAATCGTNN TNGNCGAAAG 
    NNANNCNGTC NCNTTNTTAA AGANAAANNN NAGANNTNNC NANNNCNGGG 
    CNNGNCAANC NCCCCNNNNC NCANTNNNNN NANCNTCTAN ATNCNATATC 
    TCNCCNTNAT NNTTGGNCNT NGNNNNNNGA NNNAGNCACG NAGTANGTGN 
    NTAGTGNCTN NANNTNCTNC TTNACTACNA CGCNCCANNG ANAANTNANA 
    NATANATAGA CGAG

AT4G00210.1

Model type
Protein coding
Short Description
LOB domain-containing protein 31
Computational Description
LOB domain-containing protein 31 (LBD31); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 19 (TAIR:AT2G45410.1); Has 416 Blast hits to 414 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3).
Link
InterPro Scan - TAIR