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12-1644-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28175998 [Map]; Strand: c
      • AT1G75030.1 - [+] show detail - thaumatin-like protein 3
        Distance: 615; Region: intergenic
      • AT1G75040.1 - [+] show detail - pathogenesis-related gene 5
        Distance: -1705; Region: intergenic
    Flanking Genome Sequence: 12-1644-1 - 5-prime edge 
    CCTNNAANGN AAATNNANNN NGGGGANNAN GTNTATCTAG GAACNANGNG 
    NNACNATGNA CCCNACGNTA CNANACTACT TCGGAACGCA TCNAACCTGA 
    CNCAGCNAAG ACANNTGATA CATGCATGCA TTAGCATAAT AAGCANAATG 
    AGGGTTACTA GGTNTATCCA TATTTGCAAG ACAATGCCCA GTGGGGTGAA 
    TTATGAGACA TTCTCTGGTT TACAGAAAAT GGATGAGCTT CAGGCTATTG 
    TAGGATTCGT TTAGGCTGCC ACAGGAATAA AGAAAGCT

AT1G75030.1

Model type
Protein coding
Short Description
thaumatin-like protein 3
Curator Summary
encodes a PR5-like protein
Computational Description
thaumatin-like protein 3 (TLP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1604 Blast hits to 1584 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 52; Fungi - 78; Plants - 1423; Viruses - 2; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75040.1

Model type
Protein coding
Short Description
pathogenesis-related gene 5
Curator Summary
Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.
Computational Description
pathogenesis-related gene 5 (PR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1613 Blast hits to 1588 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 84; Plants - 1422; Viruses - 4; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR