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12-1654-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13235110 [Map]; Strand: w
      • AT2G31080.1 - [+] show detail - transposable element gene
        Distance: -8062; Region: intergenic
      • AT2G31081.1 - [+] show detail - CLAVATA3/ESR-RELATED 4
        Distance: -2937; Region: intergenic
    Flanking Genome Sequence: 12-1654-1 - 3-prime edge 
    AATCCAATGG CTTTCATCAA ACAAAAACTT TACTATCAAG GAAGTTTTAT 
    TGAAAATCTG AATTTTATCT TCGGAATATT GAGAAAAGTA AAAAACTAAA 
    TAATGATATA AAATTAAAGG TCAAAATGTG GCCGCAATCA AATAAAAAAA 
    TCTTATACTA GTGAATAAAG TAAATTGATG AGTGTATTTT TTTTTTTNGC 
    NANCNNGNCN NAAAATNTNN AANCTCCCAC CCNGGNCCGN NANCCCCCCG 
    NGCCCNTNNA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13235223 [Map]; Strand: w
      • AT2G31080.1 - [+] show detail - transposable element gene
        Distance: -8175; Region: intergenic
      • AT2G31081.1 - [+] show detail - CLAVATA3/ESR-RELATED 4
        Distance: -2824; Region: intergenic
    Flanking Genome Sequence: 12-1654-1 - 5-prime edge 
    ATTGGATNTA CATCTATATT NNNATANCTA NTCCAAGNAG ACNTATAATN 
    NTATGTGCAA CTAAAACACA AATTACCTTT GAACAACCAT TTTTTCTTTT 
    TCTTTTTCAT TTGCGAACAA TTTAGTAATC TAGATCTGGC ATCGATCAGT 
    ATGTTCCACT CGAAACAGAA CGGTAGTTCG ATAAAATTGT GCTCCTCAGT 
    GAGGGATATC AGGATTAAGA TAAAAGTTAG GAGAGATGAC GGAAACATAT 
    ATACCTCATT CGATGATGTT CTTAGAAATG TTCTTAACAT TTATGAGATG 
    TCATGATTGG TTCTCTAAAA CAGCTTACAT AACATTTATG AATAGTTGCG 
    GTTACATACA TTTGACACTA AACAGTATTT TCATCCTGCT TTTTATGAAA 
    GCACCTTTTT TATTTTCTTT TAAACAGCAT TTTAAATCAA AAGTTTATTC 
    TTTCTAATAT TTGCGGTCAC ACTAGCTAAT TTACTCCTTT AACGTTTACT 
    TAAGAAAATT AACATAAACA ACAACAAAAT ACCATTAGAT AGATTTAGCG 
    GATATGATAT ATACATACTT AACGAACATG TTGGGTAAGT TTCAAGAGTA 
    ATTCTATCAT TTTTTTAAAA AGGGNTNAGN AATTATNTAA TTTTGANAAT 
    GAGNAACCCC AAAACCCANG GANGCNTGNC NCATCTACCT CCTGAGGATN 
    GAAAATAAAA TTTTAAANGT GGGT

AT2G31080.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G31081.1

Model type
Protein coding
Short Description
CLAVATA3/ESR-RELATED 4
Curator Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
Computational Description
CLAVATA3/ESR-RELATED 4 (CLE4); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 3 (TAIR:AT1G06225.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR