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12-1664-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 75425 [Map]; Strand: c
      • AT5G01190.1 - [+] show detail - laccase 10
        Distance: 669; Region: intergenic
      • AT5G01200.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -1691; Region: intergenic
    Flanking Genome Sequence: 12-1664-1 - 5-prime edge 
    GCCATGAAGA ATGAAATTTG GATATTTCGA TACGATGAAA TACACAGAAA 
    AATAGTTATC AGGAGTAATT AAATAAGGTA GGGACAAAAA AGGAAGCCAA 
    TACCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 75541 [Map]; Strand: c
      • AT5G01190.1 - [+] show detail - laccase 10
        Distance: 785; Region: intergenic
      • AT5G01200.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -1575; Region: intergenic
    Flanking Genome Sequence: 12-1664-1 - 3-prime edge 
    TTCATGGCTG ATTTAACTAG TGTTTATAAT TATACTTTAT ACTTTTTTTG 
    GTTCTTAATC ACACATGCTT TCGGGGTCAA ATTGTAAGCT

AT5G01190.1

Model type
Protein coding
Short Description
laccase 10
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 10 (LAC10); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 9531 Blast hits to 8327 proteins in 1383 species: Archae - 24; Bacteria - 3756; Metazoa - 439; Fungi - 3375; Plants - 1571; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01200.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT2G38090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR