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12-1791-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10853275 [Map]; Strand: w
      • AT4G20050.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-1791-1 - 5-prime edge 
    CTTTTAATTT GGAAAAATTG ATTAAAAGTA AGAAATTCAA AAGAACATGT 
    ATATATAGAG AATGTATGTG TATAATGTAT CTACAAAGAA AGAAATCATG 
    CCTGTTATAT GATATACAAA TAAAAGGTTT CTCTGTTGGA CAATGAAAGA 
    GGCTTCTTCA TCTTAAAAGA ATTAAAAAAA AACAGAGAAA ATTTTAATCA 
    AANAATGATA GGTAATTTCT TAGCAAAAAA AAGAATGATA GGNAATGAAA 
    NGGGGAAATG TTGGGATTAC TTACCANATN TATGAAATNG GCCTTTTATT 
    TTCATAGCAA AATNGAAAAG TTAGNCTAAA GTCATGTTAG GGGGTAAAAC 
    AATTAGGTTC CCAAATCTNC CTATTTATAT GTNCCTTATA GTTAATTACC 
    ANCCAAANCA AAGAAAAACA TATGAAAANG GATGCAAAGT ANGTNGGNTN 
    CCCAAAGTTA ATTAAATGCN ANCCAAAATC AACGGGNANT GANCNTACGG 
    AAACGTTTTT CCCCATNTNA CCTCGGGGNN AATTNGNANN GACAAAAAAA 
    TAAAAATTAT TTGAGGCNAA ATAAAAGNTT TTACCNTNNG AAAATTTTTT 
    ACCCAAACNA AANGNNAATG GGCCGNTNAA NNNTTCCCCA CNTAAAATTT 
    TNCCNNAATN AAAAAAANAG NNCNNTNCCN NNCATTTNAG GNGCNAANAA 
    TTCCN

AT4G20050.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Curator Summary
Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.
Computational Description
QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G20040.1); Has 103 Blast hits to 103 proteins in 26 species: Archae - 2; Bacteria - 18; Metazoa - 0; Fungi - 3; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR