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12-1844-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2213024 [Map]; Strand: w
      • AT3G07010.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 12-1844-1 - 5-prime edge 
    CTNGGATAAA CTAACAAAAT CGGTTATACG ATAACGGCTC TGCAGTTAAG 
    AGCACCCGAG TAAGAGGTCA TGGTGCCGAC GAGTGAGGAT GATTTTGCTG 
    ATAAACTCGA AGCTCTGGCA TAGTTGGATC

AT3G07010.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G48900.1); Has 1586 Blast hits to 1578 proteins in 262 species: Archae - 0; Bacteria - 663; Metazoa - 0; Fungi - 221; Plants - 695; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR