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12-1856-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30239565 [Map]; Strand: c
      • AT1G80430.1 - [+] show detail - pre-tRNA
        Distance: 1700; Region: intergenic
      • AT1G80440.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -2042; Region: intergenic
    Flanking Genome Sequence: 12-1856-1 - 5-prime edge 
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CCTNGAAATA ACTAGCCAAA AGAGTTTAAT 
    TACTTCTTTA TATATGNGAT CTGTTATTTA TTTGCATTNT ACTCGTTTTT 
    TTTTCNAANN ATGTCCGACN CTNGATNAAA TTANAAGCAC AAAGCCTCGA 
    AGCAAACCCG GCAAAGATAA TAACATCTGC CAGAGCTAAG TAATAAGGTT 
    TACAGTTAGA TGATCGAGAG AATATGAGCT TTGGCACCGC ANAAAACGCT 
    GGCCAATTAC ATAGGAAAAT GTTCATTTGA AAAGATATAT AGCTAAACAG 
    TATATATGTC TCAAAANATA GTTNGACTCG CCGCATCTTT CTATTAGGCA 
    CTCGACGTCT TCATCATATA TGCATTATTA TTTNGCATAT TAATTAANGG 
    TAGGGATCAA ATNGTTACGA ANACATGCAA TANATCATTN GGATATTCAT 
    GCGGNCGACA TCAAATAAAA CAGCTCTCGT ACATACAGAC AGGATAAGCT 
    CATGAAGTTC CCTTNGGNAT TTATTTTNAC GTCCTTTTCC ATATCCATTA 
    TGATAGTTAT CCGGTANCCT GACGTGGACT TTGTATCTTC TACNGCCAAA 
    GTAAATGGAT TTTCTTTTTN ATANGTGCGC GGGAATATTC TATTGTCATT 
    NNNCCTCATC NTCATATACT AAACATNAAC TTATCTACCT TTTTTTTTTA 
    ANGGGGTGGC CCANNGGTTN NNGNTNTTTT TNGAAAAA

AT1G80430.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: AGA)
Link
InterPro Scan - TAIR

AT1G80440.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR