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12-1887-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17511279 [Map]; Strand: w
      • AT4G37200.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G37210.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -980; Region: promoter
      • AT4G37210.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -992; Region: promoter
    Flanking Genome Sequence: 12-1887-1 - 3-prime edge 
    TAAAACGGCA GAGGTATTTT ACTNACCGTT ACCGACCGTT TTCATCATAA 
    TAACGATCTG ATGAGTAGCN TNTTTTGTCA TCTCTCTCAC TCTCTCCCGA 
    CGATGGCTCG CTTAGTATTT TCTTTAAACC TTCCATCTAG TCATGGATTC 
    AATCTCAGTC CTCGAAATCT TCAATCTTTC TTCGTTACCC AAACAGGAGC 
    TCCACNGATT TCGCGCTGTT CGTTGCAAAC CAAACCCAGA ATCTTCCGAA 
    ACCAAACAGG TGAAAATTTC GATTCTTTTT GAAATGGGTC GAAGGCAAAT 
    TAGCTAAAGT TTTAGCCTTT ACCTGATTCA GGAGAAATTG GTAATAGATA 
    ATGGTGAAAC TTCATCTGCA TCGAAGGAAG TGGAATCATC ATCATCTGTT 
    GCTGACTCTT CTTCTTCTTC TTCGGGATTC CCTGAATCTC CCAATAAGGA 
    TATCAATAGA AGAGTTGCCG GCTGTTACTG TAATCGCGGC TTTGTCGTTA 
    TTTGTATCGA CAAGGCTNGA TTTTGGGATT TCTTTGAAGG ATNNAACCGC 
    TTCTGCGTTG CCTTACGAGG AGGNTCGTNN TTGGATTCCN NCATCTGAGT 
    TGCTATTCTC ATACAANGCT TAATGAGTTT TGCGAATGGG NGNTTTATGC 
    NNTTATTCNA NNGGGAAGCN GACNGTNNTT GANNTCTANG CAGANAGGGN 
    GNGCAANGNA GTCNANAACN TATCNACCNG ANGNNTANNA CANGNNGANC 
    CACGCNANNA GNNNCGNNAT CNCCTT

AT4G37200.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.
Computational Description
HIGH CHLOROPHYLL FLUORESCENCE 164 (HCF164); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin X (TAIR:AT1G50320.1); Has 12708 Blast hits to 12383 proteins in 2440 species: Archae - 136; Bacteria - 7708; Metazoa - 1002; Fungi - 428; Plants - 950; Viruses - 3; Other Eukaryotes - 2481 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37210.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37210.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR