Home
Mutant Lines
12-1907-1

12-1907-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 13631 [Map]; Strand: w
  - AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -272; Region: promoter
  - AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
    Distance: -996; Region: promoter
Flanking Genome Sequence: 12-1907-1 - 5-prime edge
```
CAAACATGGC GCTCGCGCTC TCGCTGTCGG CATGTTCTCC TCCACTCCGC 
CGCACTCGTC GTGCCGGTTT TCGAACAAGC TGCTCGATCT TCGCGAATCC 
AGCACAGCGA GCCAAGAGGA AGCTGCTTGA GCTGATCTCC GAGGAGGATC 
GAGGTCTGAG AACCCAGAAA GACCCCAAGA AGCGAGATGA AATCGTGAAC 
GCCATCGAAT CCATGACGGT TATCGGGCGC AGCTCCATCA CCACAGACNA 
CTCTCTATCT GCTACGTGGC GGCTCTTGTG GACGACGGAN AAGGAACAGT 
TGTTCATCAT AGAAAAGGCA GGCTTGTTTG GGACGACCGC CGGANACGTT 
TTGCAGGTGA TCGATGTGAA TAAACGGATC
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 13515 [Map]; Strand: w
- AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -156; Region: promoter
- AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
  Distance: -12; Region: promoter

CGTGTNNGCA AATTGCAATT TNCATGGCNA GGTTGTTGCA CGGAAGAAGA 
AGAAGCANAT ACCTCTGTGA NTTGGGTTTC TTTNTNTANA AAGCCCATTT 
GGGTTTTATT NGCGTTTATC TCATGAGTCT AAGCCCAAGC CCNAGGAAAT 
AGCNTTGCNC NGTGCGCGGT GAGGTGTNNN CGATTTNACC CNAGNNNCGG 
CNAGCGGCNT TGCNNTTGNT NATTCNACNN TCGGTGGTGT GCGNGNCGTN 
GTCGAGNNNG NNNNGATTTN TCNAANNAAA NAANACTNNC NNGNNTNNAN 
ANATNANNTA TCNGCNGACC NNGTNTNNTN NGNNANGAAC NNNNNGCNCA 
NTTANNTCNG NCNNNTGATA AAAATGNNNA ACCATTCNTT CNATANTAAA 
AAANGGANNA NGNCNGTGAG NNTTACGACN TANAAACATG NNNGAANNAA 
NNGANTNGNG ACNANNGACN NGAAANTAAA NANNCNGNAA TAGAANNCNN 
CNNNNNTNAN AANGTTTCGC NCNNCGNTNN CCTNCTNGCG NNTTCNNNGT 
CNNGNCNTNG TNTTNCCTCN ATNTNNTCNN GGNCCGTNNN NTGGNTATNA 
GCNNNGTNGG CTTNNTNNNA CTTTNAGCGT NNNNTCGGTN GTCNGNNGCG 
NNGTCCGNNN NGGNTTNTTT TCNNNGGGGG GGNCTCNCTT GGATNNNNGN 
CANCGNCGNG CGGGGNGTGN NANCGNCNNN GGANNATNAN ATCTNNTCNN 
NANACNNGCN NNCNNNANTN NTAGACNANN NTGCGTNCCN NGTNANAAAA 
NNNANNATNA TANAAG

AT4G00026.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00030.1

Model type: Protein coding
Short Description: Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description: Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00040.1

Model type: Protein coding
Short Description: Chalcone and stilbene synthase family protein
Computational Description: Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link: InterPro Scan - TAIR