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12-1917-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23312050 [Map]; Strand: c
      • AT1G62940.1 - [+] show detail - acyl-CoA synthetase 5
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-1917-1 - 5-prime edge 
    ACCGGAAGTG TTCTTCGGGA GTGATCTACC GGTGTCAGGA TCTATGAACT 
    TTACCTCGAG ATTCGGAAGT ATGAAACCAA CCGAGTTTCG TTTCGCGATT 
    CCTTGTCCTT TCTCTGGATC TCCGTGAGTT AACGTAATGC AACTATGCTC 
    CGTTAATCCA TAAGCCTAAT ATATATATAT ATATATATAT NNCNANANAA 
    CACNTNNNNN CACNNNAANA ANGGGGANAT NNCNCACANA ANAGTNNTAN 
    NTCANNCCTC NGGNACNGNN ACANANANAN ACNNGNCTTN GAGNGCAGAA 
    AAACNCNCGA GANNTANGNG ANCNNCCACA CTNGANACAC ANNGANNTNT 
    AANNTACCNN CGGGGGNCGN ACNNCACGCG CGCTATATAN A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23312166 [Map]; Strand: c
      • AT1G62940.1 - [+] show detail - acyl-CoA synthetase 5
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-1917-1 - 3-prime edge 
    CTTNCGNNGA NCTNTNTGTG AGGAGCCAAT GNGTCCTGCA CGGNTNCTTC 
    ATGAACANGG ANNANACTGA CAAGACAATT GATGAACAAG GTTGGCTTCA 
    CACAGGAGAT ATAGGTTACA TCAGATGATG ATGGAGATAT CTTCATCGTT 
    GATCGTATCA AAGAACTTAT CAAATACAAA GGTTTTCAGG TAAAATGTTA 
    CGTTATACGA AAAATAAAAC ATAATTTTTC CTTTGTTTCA TATTGGCCCC 
    ATTTTCAAAG TTTTGGTGTA ATATTCCAAT AGGTTGCTCC GGCCGAGCTT 
    GAAGCTATTC TACTCACTCA TCCATCCGTT GAAGACGTTG CCGTCGTGCC 
    GTGAGTATCT ATATAAATAT ATTGCCGTAA TGATTTCTTG AAACTGATAT 
    ATTAAAACAT GAAATGAAAA GGTTACCGGA CGAGGAAGCC GGGGAGATTC 
    CGGCGGCTTG CGTGGTGATA AATCCGAAAG CGACAGAAAA GGAAGAAGAC 
    ATTCTCAACT TTGTTGCAGC AAATGTGGCT CATTACAAGA AGGTCAGAGC 
    CGTCCATTTT GTGGATTCAA TCCCTAAATC TCTCTCTGGT AAAATCATGA 
    GGAGGCTTCT TANAGACAAG ATCCTCAGCA TCAACAAGAA NTTGGAAGAA 
    AAGANACTCT TACAAGCT

AT1G62940.1

Model type
Protein coding
Short Description
acyl-CoA synthetase 5
Curator Summary
encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.
Computational Description
acyl-CoA synthetase 5 (ACOS5); CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate:CoA ligase 2 (TAIR:AT3G21240.1); Has 80303 Blast hits to 72777 proteins in 3663 species: Archae - 1209; Bacteria - 52830; Metazoa - 3472; Fungi - 4003; Plants - 2782; Viruses - 1; Other Eukaryotes - 16006 (source: NCBI BLink).
Link
InterPro Scan - TAIR