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12-1941-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28454551 [Map]; Strand: w
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: -911; Region: promoter
    Flanking Genome Sequence: 12-1941-1 - 5-prime edge 
    ACTGTTTATA CGTAACGTCA AAATCAATAA TTGAACTTGT AAAAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28454435 [Map]; Strand: w
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: -795; Region: promoter
    Flanking Genome Sequence: 12-1941-1 - 3-prime edge 
    TAAACAGTAG ATCGACCATG ACATAAATAA AAATGAAAAA ATAATTGGAT 
    CAAATCTCAG ATCTTACTAC AGTCTACATC TACCTAGCTA CATGTGCTAT 
    GGCATTATTT GTTTTTCATG TTATCATCAA TATTGTATAA TAGATCCAAA 
    CACAATCAGT GTGATGCTAT TTTTCTATAC TTTTGATCAT TCAACCGATT 
    TCAATTATTG TGTTTGATCG TTTACATAGA AATAGGTACA TATGCATTCA 
    AGATCTCCAG ATCGTTTATT ACGTCTTGCT ACATGTGCTA TGTCACTAAA 
    ACAACTAAGA TACTACATGC AAAGTTACTG TATTCATTAC GCATTGATCA 
    TCTTCTTCTA CGCACTATTA TTGAATTTTT GTTTCTCGAT GTTTTCAGAA 
    GTCATAACAT ATAATCAAGG GTGGTTGTAG CTAGTCGTGA TGAAATTCGA 
    ATAGTAAAAG ATTCATCAAA TGGATCAAGA TTTGAAACTA GAATGAATGA 
    TCGATACTTG AAAGCTATCA CACTTAAATA GTTAAATGGA CGATATAATT 
    CAACAATATC TTAAATAACA TTAATCATTC ACTTTGTAGA AATTTCAATT 
    TGACGGTGCT AACAACAATA TGTGACATTT TTGTTTGCAG CAAAAAAGTC 
    AAATGGTAAA AAATACATTT TTTAAAAAGA GAGTNTAGTA AAAAACAGAG 
    GATAAAAACG AACAACGGNT AAAGCTGGCA AAGATCCCAT CTTCCCCCCN 
    CTGTCAAATT TTGNC

AT1G75780.1

Model type
Protein coding
Short Description
tubulin beta-1 chain
Curator Summary
beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses
Computational Description
tubulin beta-1 chain (TUB1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain (TAIR:AT1G20010.1); Has 23671 Blast hits to 23575 proteins in 4891 species: Archae - 36; Bacteria - 42; Metazoa - 4470; Fungi - 14216; Plants - 1549; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).
Link
InterPro Scan - TAIR