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12-1944-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9827728 [Map]; Strand: w
      • AT1G28130.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G28130.2 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-1944-1 - 5-prime edge 
    GGAACAGGGA CAAGTCGATT GGGCCATCNG GAGATAAGAG TGGTGAGTTT 
    GGGCACAGTT NGATTCGATA ATGGATTTTT GTGTCTCACA AGGATCATCC 
    TTTGAATCAA GTATAAGACT CCAAGATGTG TTAAATCTGG AGGAGCTCTT 
    GAGATTCTTG ATTCCAGAGT TATTGGGAGG TTCTTCANTA AAAGAGTTCC 
    TCAATGGGAA CCACTTGGTT TAGATTCTTA GACTTTACTT NTTTTTCTTT 
    ANTGTATGAT AAAAGTCTTG ATTTTATAAG TATAAGATC

AT1G28130.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational Description
GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1405 Blast hits to 1296 proteins in 239 species: Archae - 0; Bacteria - 491; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28130.2

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational Description
GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1092 Blast hits to 1087 proteins in 203 species: Archae - 0; Bacteria - 311; Metazoa - 52; Fungi - 2; Plants - 653; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR