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12-1966-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8056753 [Map]; Strand: c
      • AT1G22760.1 - [+] show detail - poly(A) binding protein 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-1966-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTNATNGC TCTCCTAANA NAACNNNNGN NCACCNCNTG TNCATTAATT 
    GNTCTGNGNC NAATNTCCNN AGAGGAGTAT TGGTGANGNC CATCTNNGAA 
    NAACANNACG GTNCATGNNN AGTGANCTCG NGTGCNCTNG NAATGAGGGA 
    CCAGAGCNGG AAACGTCGAG GTGTTTCGGG TTTGTGAATT TTGAGTGTAC 
    TGAAGCAGCG GCTTCCGCGG TTGAGAAGAT GAATGGAATT AGCTTAGGGG 
    ATGATGTGTT GTACGTTGGG AGGGCGCAAA AGAAGTCTGA GAGAGAGGAA 
    GAGCTAAGAA GGAAGTTTGA GCAAGAGAGG ATAAACCGGT TTGAGAAATC 
    TCAAGGAGCG AACCTGTATT TGAAGAATCT TGATGATAGT GTTGATGATG 
    AGAAACTCAA GGAGATGTTC TCTGAGTATG GAAATGTGAC ATCCTCCAAG 
    GTAATAATTA ATTAAAAACT CATACATATA TTCATAAATA TATATGTTGT 
    TGATGTTACG TTGTCTTTGA CACAATCCTT TAACTAATGT AGGTTATGCT 
    TANTCCNCNN NGAATGANCN NANGATTTGG NTTTGNTGCT TATTNCAATN 
    CTGAANAANC TNCANCCNGG CCNNNNNNCA NNCNTG

AT1G22760.1

Model type
Protein coding
Short Description
poly(A) binding protein 3
Curator Summary
Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.
Computational Description
poly(A) binding protein 3 (PAB3); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2); Has 52215 Blast hits to 23458 proteins in 902 species: Archae - 22; Bacteria - 3112; Metazoa - 26727; Fungi - 6853; Plants - 9433; Viruses - 0; Other Eukaryotes - 6068 (source: NCBI BLink).
Link
InterPro Scan - TAIR