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12-2002-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18978774 [Map]; Strand: w
      • AT2G46210.1 - [+] show detail - Fatty acid/sphingolipid desaturase
        Distance: 0; Region: exon1 (CDS)
      • AT2G46220.1 - [+] show detail - Uncharacterized conserved protein (DUF2358)
        Distance: -697; Region: promoter
    Flanking Genome Sequence: 12-2002-1 - 5-prime edge 
    CTCCGGACAG TATCGCCGGT GGTTAAGGAG CTTTGTAAGA AGCATAATCT 
    ACCGTATAGG AGTCTTTCGT GGTGGGAAGC TAATGTGTGG ACGATTAGGA 
    CTTTGAAGAA CGCNGGCGAT TCAAGCTAGA GATGCGACTA ATCCTGTGTT 
    GAAGAACTTG CTTTGGGAAG CTGTGAACAC GCATGGCTAA AAAGGTGTTT 
    CGTTTGTCGA GTACTTTTTA ATTAGATTGA ACTGTTTTAG GTGTAACTCT 
    ACCGTGATAA AAAACTACAT TTTTATTTTG ATTTTCTGCT GAGTTTATAA 
    TTTTCTAATC GCTAAGCCTA AGAATCTATT TTTGATAAAC AAATTTGTCA 
    GACATGCGTG CTTGTTCTAC GTATAAGACG GATCGTGCGG GTCTAATATA 
    CATGACAAAG TACTCCACCG AAAAACCCGA GCTTTTGAAC CAAATTGTTT 
    GAGTTCACGT CAATGTAAAG TTTTATCTGG AAGGGTTCAT GCTTATTATA 
    CAACAAATGA AAGAACATTT TGCCAAATGA ATTTGGAGTT TAGGAAGAAA 
    ACAAAAAACT AGTTGGGCCT CTTTGAAACC GTTTCATACA CACAGATATA 
    AGTGAGGCTT CCTATAATTA TTTTTGTAAT CAAATTATAA TAATGAATGG 
    GCCTTTACTT AAAGGTACGT GAAGCCCTGA CCTTAAATGG ACCGNCNTAT 
    AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18978658 [Map]; Strand: w
      • AT2G46210.1 - [+] show detail - Fatty acid/sphingolipid desaturase
        Distance: 0; Region: exon1 (CDS)
      • AT2G46220.1 - [+] show detail - Uncharacterized conserved protein (DUF2358)
        Distance: -813; Region: promoter
    Flanking Genome Sequence: 12-2002-1 - 3-prime edge 
    GTCCGGAGAT GACAACGAGG AAGCCGAGGA AACAAATGAT GCTCTAACTG 
    AAACTGCAAT CCACCAAAGA ACCAATCCAT AAACGATCTA CACGATATAT 
    CAAGCGTACC GGCGGTTTGT TTCTCAAACC AATCGTTTCC GTTTGGTGGA 
    CCGGTATACA CATCTGCTGC GAAATGGTTT AAACAGAACT GAACATGTTG 
    AATCGCCGTG ACGGCGAAGC TCACGAAGAC GAAGATGAAT CTCTCTTGCC 
    AATTCGGAAG GAACGAGACT AAGAGAGGGA ACCATGTCCA GAAAACTAAA 
    ATTCCGGCGA TGTTCAAGGT CCGATCTGGG ACGTGGCGTT TCGAGAATAG 
    CAATAGGAAT GTTTGGATGA AGAGGTTGAT TCTTCCGACG CACATTACTG 
    GGTAAAATGT CCAGTGTTGG TAGCTGATTA AGAATCGAGC TAGAGGATCG 
    AATGTTAATT TCCTGCCATA GAAACGTGAC GTCATCGAAT TGAAGAATTT 
    TGTANAGACG GCGAAGATCG GGATGTGTTG TAGATCCGGA TCGTGGTCAA 
    GGCTGTTACA AGCGATGTGG TGAGCGTTGT GCGTCCATTT CCACCACGCG 
    ATTGANATGC CGGTGAGACA GTTACCGGAG AGAAGCTGGA TTANTTTGTT 
    CACGGNTTGG TTGACNTCCC NNGTNNTGAC CGGAATCNNG GNCGACNTAN 
    NCNCTTTGGA TACCANNCCG GGCCGNNNAC CACNNT

AT2G46210.1

Model type
Protein coding
Short Description
Fatty acid/sphingolipid desaturase
Computational Description
Fatty acid/sphingolipid desaturase; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT3G61580.1); Has 5941 Blast hits to 5850 proteins in 906 species: Archae - 2; Bacteria - 1188; Metazoa - 1112; Fungi - 1689; Plants - 939; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46220.1

Model type
Protein coding
Short Description
Uncharacterized conserved protein (DUF2358)
Computational Description
Uncharacterized conserved protein (DUF2358); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G16320.1); Has 199 Blast hits to 199 proteins in 64 species: Archae - 0; Bacteria - 74; Metazoa - 19; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR