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12-2004-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19693816 [Map]; Strand: c
      • AT5G48570.1 - [+] show detail - FKBP-type peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-2004-1 - 3-prime edge 
    GGAGTGAAGA AAGAGTGTTT TGGGGTTTTT CTAGAGACTT CTGATTTTCA 
    TTTGAATCCT TGAGCCTAAA GATGTGTCCC GATGTTTCCA GATACTGACT 
    GTTAGCGTGA TTTTTATTTT TATTTGTTAG AACACNTTTT TATTTTTATT 
    TTGAGCGGGT CTCGTTAATC TAAAATTAAT AAATTAATTT TTTAAAAACA 
    CAAGTTTTGA ATCATTTTAA ATACTTAAAA TTTAAAATTT GATTATAGAA 
    GCATTATTTT TGTGACTAGA TTTTTTTTTA TTATTCTAAA TCAAATAATA 
    TTTTATTTTA TACAATTTAC TATTCATCAT CCTTGACTAA TAAAAATTAA 
    AAAGAGCATA AAGACTTAAA CGATTTATCT TTTTGAAATA TCTATAGCCG 
    NGGTTTTATT TACAATAAAC AAAAAAACTA AAATTATTAG CTAGTTAATT 
    GATCTGTATT TCGTATGGTT GGTTCAATTT TTTTTATGAT TTGNGGCTAA 
    CTAGTTTATG TATAGTTATG CCTTTGAGTT CAAGTTGACT TGATCTTGCC 
    GGGAGAAAAG GAANAAGTTG TANATGTCTC NCTCTGAATA GCGGTCTCAA 
    CGAATTTGGT TGTGACTTGT TCCCACTTAG GGAGNGGNCT NCTTAATCTC 
    TGTTTGNNTG GGCCGTNGNG CATGTCAAAT ACCCNNCTTT NTTGCCTTTT 
    TTCTAACTTA CNATNCTACT NGGGNNGGGN NNANCTCTTT GATAGNCTTC 
    CNTTTTTNTN GNNANNNCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19693700 [Map]; Strand: c
      • AT5G48570.1 - [+] show detail - FKBP-type peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-2004-1 - 5-prime edge 
    TTCACTCCCC CTATAAATTC TCATCACAAT TTCTCAAACG ATCTCATCTC 
    TGCCAACACA CTCTCTAGAA TT

AT5G48570.1

Model type
Protein coding
Short Description
FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Computational Description
FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR