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Mutant Lines
12-2013-1

12-2013-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19551610 [Map]; Strand: w
- AT2G47680.1 - [+] show detail - zinc finger (CCCH type) helicase family protein
  Distance: -705; Region: promoter
- AT2G47690.1 - [+] show detail - NADH-ubiquinone oxidoreductase-related
  Distance: 0; Region: intron1 (CDS)
- AT2G47690.2 - [+] show detail - NADH-ubiquinone oxidoreductase-related
  Distance: 0; Region: intron1 (CDS)

CCGGTGATAT TGTTTGAAGA ATTTCATTGA TTTGATGGTT CTGATGTTCG 
CCACTGTTTC CGGCTAGATC AGTGTGATTG TGATGTCTAG ATCACTTAGT 
TGTCGAAATT CCAAAAATCC TAGATCAGGT CGAGCAATTG GGAAATGAGT 
CCCATGCCTT TGTTGATTGG CCATTTTCGG AATCCTCAGC TGCAGAATCA 
AGATGCCATT GAAAGATCAT GTTCTCTTGT TTAAGATAGG ATGTATCGAT 
TAGGCGTTTC TGGAACTAAA TCATCTCTGT ACATGTTACA ACTGTTTCTT 
CTGCAATTAC ACGGCTCTCT TAGAACATTA CGATTGACAC CAGTGGTTTC 
TTTACTTTGA ATGAAGATGC TGTAAGTTTA AGTTTTTATG TGTTGTGTAC 
CTGTTGTTGC AGTTTCAAAG AAGGAACAGG ATATACAAGG AGGAGCAGCG 
TAAACTAAGA GCANCTTCNA GGAAAGGTGA ANAANCCGGA GATGGGACTC 
ACACCCATCA CTANTNTCAA CAATCCTNCT TNNNNNTNNC NNNNNNGGCC 
NNNNNNCNNN CNNGCC

AT2G47680.1

Model type: Protein coding
Short Description: zinc finger (CCCH type) helicase family protein
Computational Description: zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47690.1

Model type: Protein coding
Short Description: NADH-ubiquinone oxidoreductase-related
Computational Description: NADH-ubiquinone oxidoreductase-related; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5 (InterPro:IPR019342); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G62790.1); Has 131 Blast hits to 131 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 64; Plants - 56; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47690.2

Model type: Protein coding
Short Description: NADH-ubiquinone oxidoreductase-related
Computational Description: NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G62790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR