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12-2028-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20670600 [Map]; Strand: w
      • AT1G55360.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -1874; Region: intergenic
      • AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 3383; Region: intergenic
    Flanking Genome Sequence: 12-2028-1 - 5-prime edge 
    GGTCCATTAG TAAGCCACCC AAAACTTGTC TTTTTCATTT ATATTTTAAA 
    TGTACAATTT TTATGTTGTA GCTTCTGCCC ACTTGAGCGT AAGTCCAAAA 
    ACAGGAGTGA GCAAATGTCA TCGATAATTG CTTGCAAGAT CACGAAATCA 
    CAAACACGTA TGTTTTTTAT TTGTTTACGT TAATTTGCAT ATAATACATA 
    TTTATGCTAT GATGCATCAC ATGGTGCATT TTCATGCTAT GAAAAGAATT 
    TATAATTCTA CTTAGACTAA AAATATTCTA CATTGATCCG AATTAAATTG 
    TTGTTAGTGA ACTTACAAGA AAAGGCAATG AAAATTCTCC AATTTTCTAT 
    TTTAAGTTTT AACTTATGAT TAAAATGCTT TCTTTAAAAT GCCGGCAGAC 
    CATTAGTTTT CTTTTCCCTT TTATATATTT TGGGGGGATT TGATGAAAGG 
    AGNNNAAGAT GGTGAAATNC CNAANATTTN NATTACNCCT GCCCCANAAA 
    NGGNGGGGGG ACCCCNNGNT NCCANNCCGG GGGNGGGGNN NCCNNNNNNN 
    CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20670528 [Map]; Strand: w
      • AT1G55360.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -1802; Region: intergenic
      • AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 3455; Region: intergenic
    Flanking Genome Sequence: 12-2028-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGA 
    CCTTTGTCCA GATCATCCAC TATATCATAC ACCTCTTCTT TTTCATTTTC 
    TTCCTCATCT TCTTTTATAA TTCAATGTAT TGTCTCAAGA CTCTAACCAT 
    TGCATATGGT GAATCACTAA GAAACCAATC ACCGACAGAA ATCAATCACA 
    CTCTTCATAG CAAATGTATT GTCTAGATTT ATGGGTCATT AGTAAAATCA 
    AGATCCGATT ATTAGTATAA CGAGATAAAA AAATGTTGAA TATTGATCGA 
    AATTGCATAA GAAACATTTT AATGAGATGA TCTTGGTTCA TGAGGTTAAT 
    GTCTTTTTGT AATATGGAGA CTTACCTTTA CACGATTGCA ATTATCTATC 
    TTCTTTGGCA TTGGATTCCC AAAATTATCT ATTTTGACCG TCGGCTATTT 
    TTCACCTAAT TCCGGTTTTA CCCCTCTCCG TGATCCGTGC GTTAGCCATG 
    GGCTCTCTCT CTCTCTCACG GGCGTGACAT ACGCGTACGG TGAGCGATGC 
    CACTTCTCGC ACGTGTGGCC TTTGGTTACA ACACGTGTGA ATCTCTCTAC 
    TCGTAAGCT

AT1G55360.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55365.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR