1. Home
  2. Mutant Lines
  3. 12-2054-1

12-2054-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 302598 [Map]; Strand: c
      • AT5G01770.1 - [+] show detail - HEAT repeat ;WD domain, G-beta repeat protein protein
        Distance: -614; Region: promoter
      • AT5G01780.1 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT5G01780.2 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-2054-1 - 3-prime edge 
    CTCTTCTCTC CGTACAAGAA CTCTGCAGAA TCACCTATGG AGAAGGACAC 
    TATCGGCAAC CCTCTTGCTA TACTCTCTTC GCTTTCGTCA CGGTCCTGCC 
    ATAGTTATAC GCCAATACAA AACAACGCAT TATTAGTGTC AAGAGAACCC 
    TTCAAAGAGG TTTAAAGTCA AACTGCACAA CACCTGATGG AGACCAAGTC 
    TTCCAGTTTC TGAGTAGAAA TTGACTATGC AAATGTCTGG TGACATCACT 
    GGAAGTATCC TCTCCGCATC TTCTGTTCCT GATTCTCTAT CTATGAGAGC 
    ATGTGCTTCT CGGATCGCCT TTTCTACCAA GACATTAAAT GTGACAGGGA 
    TCTCTGGTGC TTTACTATCA ATGTCAGTGT TTTTCCTGTA TTTAGTCTGA 
    GGATC

AT5G01770.1

Model type
Protein coding
Short Description
HEAT repeat ;WD domain, G-beta repeat protein protein
Curator Summary
Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutations in this gene have no visible effects on embryo or plant development.
Computational Description
RAPTOR2 (RAPTOR2); FUNCTIONS IN: binding, nucleotide binding; INVOLVED IN: cell growth; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), Regulatory associated protein of TOR (InterPro:IPR004083), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT3G08850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01780.1

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01780.2

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1).
Link
InterPro Scan - TAIR