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12-2113-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22535513 [Map]; Strand: w
      • AT3G60957.1 - [+] show detail
        Distance: 0; Region: exon3 (NonCoding)
      • AT3G60960.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -193; Region: promoter
    Flanking Genome Sequence: 12-2113-1 - 3-prime edge 
    CNTGAGACCT ANNCANTGNA CACCGGCGGN CAGCTCGNNT GCATCANATA 
    CGCGGNCACC AGAGTCAANG CGGGGTTTCC NAATCATGTC TCTGATCCGN 
    CGTGCCATCT TTTCTCTGAA CTGCACCGNC GTTCTAGGAA GAGCCGGAGG 
    ATATAATGTC NGATC

AT3G60957.1

Model type
Pseudogene
Curator Summary
pseudogene of GPT
Link
InterPro Scan - TAIR

AT3G60960.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 6360 Blast hits to 3266 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 6335; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR