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12-2135-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23206520 [Map]; Strand: c
      • AT1G62670.1 - [+] show detail - rna processing factor 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2135-1 - 5-prime edge 
    GTAGTCTGTT TCTCCCTCTT TTTCCTTTTT CTGGAGACGA GCTTTCTCTG 
    GTAAGACTAG TTATGATTAC AGAGAGAAAC TGAGTAGAAA TGGGCTGAGT 
    GAATTAAAGT TAGATGACGC NTGTTGCTCT GTTCGGTGAA ATGGTCAAGT 
    CTCGTCCCTT CCCTTCCATC ATTGAGTTCA GCAAACTGTT GAGTGCAATT 
    GCTAAGATGA ACAAGTTCGA TGTTGTCATC TCTCTCGGCG AGCAGATGCA 
    AAACTTGGGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23206662 [Map]; Strand: c
      • AT1G62670.1 - [+] show detail - rna processing factor 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2135-1 - 3-prime edge 
    GATAAGCACG AATCACATCT GTTCGCAGTT GATGCAATCG CAAACGATAT 
    CCTCATTCTC GATTTGATTT CTTCTCAAGC TCTCTGATTC GGAAGCTCTG 
    TAAAATTCAA CCAAACCCTA AACGAACCAC CACCTGTGAG AGACTGTGAG 
    AGTAATAAGG CAGAGAGAGA GAGAGTGAAT GTTGAAACCG GTTTAGTAAT 
    TATGTTGTAG TCTGGGCATT ATCGGTTTGC GTTTTTAAAC CGAATCAAGA 
    AGCT

AT1G62670.1

Model type
Protein coding
Short Description
rna processing factor 2
Curator Summary
Encodes a pentatricopeptide repeat protein required for 5' end processing of nad9 and cox3 mRNAs in mitochondria.
Computational Description
rna processing factor 2 (RPF2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 71790 Blast hits to 15506 proteins in 316 species: Archae - 6; Bacteria - 84; Metazoa - 1433; Fungi - 1460; Plants - 65974; Viruses - 0; Other Eukaryotes - 2833 (source: NCBI BLink).
Link
InterPro Scan - TAIR