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Mutant Lines
12-2163-1

12-2163-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity /structure development stage	Phenotype
vascular leaf (PO:0009025)	desaturated green (PATO:0001272) (Leaves::pale green)

Anatomical entity
/structure development stage

Phenotype

vascular leaf (PO:0009025)

desaturated green (PATO:0001272)
(Leaves::pale green)

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 5405265 [Map]; Strand: w
- AT1G15710.1 - [+] show detail - prephenate dehydrogenase family protein
  Distance: 0; Region: exon1 (CDS)
- AT1G15720.1 - [+] show detail - TRF-like 5
  Distance: -760; Region: promoter

GCTGGATCNT NATTNAGGGC ANCAGTNCAT ATGGNAANGG NNNGNGATAN 
ATNNNGANTN AANNTTCCAN GCGATCTAAC ACCATGANGT GATCNACACG 
NCNGGNNNAT TTGNCGGACA ANGCACTTAT AGTGATAGCN TTTGAGCNTT 
TTCTACNGGT TTGTTTATGT ATAATCCGAA TGCTCTTGAA CAGTTGGAGA 
GATTGGATAT GGCTTTTGAG TCTGTTAAGA AGGAGCTGTT TGGGAGATTA 
CATCAGGAAT ACAGGAAGCA AATGTTTGGT GGGGAGGTTC AATCGCCGAA 
GAAAACTGAG CAGAAATTGC TCAACGATGG TGGTGTTGTT CCGATGAATG 
ATATATCATC TTCATCATCA TCATCTTAAG ATCACAAGTT TGATTGGATT 
ATGCTAGATT CAAAAATAAA AAGTTGTGAC TTTTTTGGAA AACCTCAGAG 
TGGAAAATAA AAAAGGGATT TTGGTGTGTG TTCATATGTA TGTTGGGGTC 
TCTTTTGGCT GGTATCAATG AACCTAATCT TTTTTTCTCT AAATGTATCT 
GNGGAAATGC TTATCCCTNT GGTCNCCGGA AACAAATACG GACAAATNGN 
CTCCTTCTCC GGCCTTTTTG TATTGGATCA CATTGNATNG CTCAAAAGTC 
AATNACNTGT TTTTTAACTG AAAAACTTTA ATCCCTGTNT CCAATGANNC 
CGGGNCACCC CNCCCNATTN GNAN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 5405159 [Map]; Strand: w
  - AT1G15710.1 - [+] show detail - prephenate dehydrogenase family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G15720.1 - [+] show detail - TRF-like 5
    Distance: -866; Region: promoter
Flanking Genome Sequence: 12-2163-1 - 3-prime edge
```
GATCCAGCTG CGTAATAATC ATGCTTCTCA CAGCTCATTT CAACCATCTT 
GCAACCTTCA TTCTCAAAAA TTCTTAGAAA CTTCTCACAC CTCTCTTGTC 
TTGAAGCTGC GTATCCGATT CTCACCTTAT CGTAGACAAA GGGCAAGCCA 
GACCAAGAAT GCTTACCACT CTCAGGTCCA AACATTGGAT GAGTACAGAG 
AATGTCAAAC TCCTTAGGAA GGTATTTAAT GAAGAGGGCT TTTGGGAATT
```

AT1G15710.1

Model type: Protein coding
Short Description: prephenate dehydrogenase family protein
Computational Description: prephenate dehydrogenase family protein; FUNCTIONS IN: prephenate dehydrogenase (NADP+) activity; INVOLVED IN: tyrosine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), Arogenate/prephenate dehydrogenase (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 919 Blast hits to 907 proteins in 395 species: Archae - 81; Bacteria - 505; Metazoa - 3; Fungi - 100; Plants - 115; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G15720.1

Model type: Protein coding
Short Description: TRF-like 5
Curator Summary: Arabidopsis thaliana myb family transcription factor (At1g15720)
Computational Description: TRF-like 5 (TRFL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 513 Blast hits to 506 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 41; Plants - 402; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link: InterPro Scan - TAIR