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12-2190-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11188253 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3739; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2290; Region: intergenic
    Flanking Genome Sequence: 12-2190-1 - 5-prime edge 
    ATGATCGCAT CCGTTAGTAT ATGCAATGCA ATCGTATATA TTCTTTTTTG 
    AAGACTTGAT GAACCATTCG CCGTGGGTCC CACCCGCTAT GTAGGGATAC 
    CCCATCTAGT CTTAACGAGC TTTGATGCAT GAAAAAATTC GAAAACAATG 
    CTTGAACAAG TAATTTTGGG TCCGTAATAT AGCCCAAATC ACGAAAATGC 
    CCGAAAAAGT ACTTAAAGGT CAAAATTTGG GGTCGACAAA AAGTCAATGG 
    AAAAGTTCCA TTGTCCTGCT TCTTTCGTCG GAGGGCTGTC TTTGGGCTTT 
    CCGAAAAGGT ATCACATGCC AAGTTTGACC TCACGGTCTA AAAGTTATGG 
    AGTCATAAAG TTTTAACCAA AAAAAAAAGG GNTAANCNTA AAAANGGGNN 
    GCANCNCNAG GACTTCCNGG GNGGNCNCCC NTCNTATTNN NGNTTTGNCC 
    CAANCCCCCT NAATNGGGGG GTTNNGNGGG GATNACAANC CGGGNCCGGN 
    AANCACNNGN GCCNNTNAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR