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Mutant Lines
12-2201-1

12-2201-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 20719453 [Map]; Strand: c
  - AT1G55490.1 - [+] show detail - chaperonin 60 beta
    Distance: -288; Region: promoter
  - AT1G55490.2 - [+] show detail - chaperonin 60 beta
    Distance: -257; Region: promoter
  - AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
    Distance: -95; Region: promoter
  - AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
    Distance: -95; Region: promoter
  - AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
    Distance: -122; Region: promoter
Flanking Genome Sequence: 12-2201-1 - 5-prime edge
```
GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA GAATCACATT AATATTATAC TAGTCACTAC 
GAAATATCTC ACAAAATAAT ACTATAAATA TTATTTCCTC GAAAATTTCG 
CAATTAATCG GGAAAAAATC AATTTTTAAA ATAAATATCA CTGATTCCAA 
TTCCACTGTT AGGAATTAAG GAGCAAGAAT AAAGGCCCAA ATAGGCCCAA 
TATAAATCTG ATCCAGGATC
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 20719503 [Map]; Strand: c
- AT1G55490.1 - [+] show detail - chaperonin 60 beta
  Distance: -338; Region: promoter
- AT1G55490.2 - [+] show detail - chaperonin 60 beta
  Distance: -307; Region: promoter
- AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: -45; Region: promoter
- AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: -45; Region: promoter
- AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: -72; Region: promoter

GCTGGAATAA AGGAAGTATT TTTTTAAAAA AACGATGGAG AAAAAGGTAA 
ACAAAAATAA TAGAAAAATA TAAAAAAGGG ATCTTGGAGG TATTTGAATC 
AAATCGAGGT GAACGAACAA AACCACTTTT GCCTCTTCCT CTTCTTCTCT 
CTTCTCTTGC GGCTACGATT CAATCTCTTA AACCCTAGAT TCCTTCTGAG 
TTCTTTTTTG CTCTGATATT TGTGTTTGTC TCAAACTCTT ATTGTTCAAT 
ATCCGACAAG GATCTATTAT CAGTCTTCGC TGCCAACTCT GTTCTCATGT 
CTACTGTTGC TCCTCCTGCT GATCGTATCC TTTGCCTTTG TTTCTTTTCT 
CCTTCATTTC TTTTGTGATC TACGTTCATG AATCTAGTTG CTTCATCGTA 
ATTCGATTCA TATAGTGAAA TGATGTCATT TCCATTTGTT CTGTTTGTTT 
TAGCTCGATG AATTTGACTG TTCCTGTAGC TAGCAAAGTG AATAAATTGA 
TTAGAAAAAT CAATTTTTTA GTCTTGCTGA AGATANAAAC CTATTTGTTT 
CCTTCACTTA CATTGTTTTT TCANAAGCTG CTGATGTATT GAANAAACTG 
TCTTTAGATT CAAAGTCTAA GACTTTGGAG ATCCCTGNCC CTACTAAGAA 
NGGNAAAGTA CNTCTTTTAA NGNCTNTGCC NNTTTTNNTN CTNCNNNNAN 
NGNNCTCNTN ACANCCGTTA TNTTTNCAAA CN

AT1G55490.1

Model type: Protein coding
Short Description: chaperonin 60 beta
Curator Summary: encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description: chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55490.2

Model type: Protein coding
Short Description: chaperonin 60 beta
Curator Summary: encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description: chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55500.1

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55500.2

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR

AT1G55500.3

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR