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12-2235-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178462 [Map]; Strand: c
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -301; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 12-2235-1 - 5-prime edge 
    GGAAAAACAA TGCTTTGAAA ATTGTATTAA CCGTAAATTT GGACGCGTTG 
    AGATACATGT AGGTTAGGGC TAGCTTTACA TCATTAGGAC AGGCGTTTTA 
    GTTCCTTCAA CCCTAGATAA TATTAAAAGT TCCAATTCTT AAAAAAACTT 
    TAATATGCAG CCCAATAGAA TCGTATAACG TCAGTGACCA CTTCATTTGG 
    TGTCAACCAA TTAAAAACTG ATCAGTTATA GAAATATTAA ACTAGTGATA 
    ATGCGCATTT TGAATGTAAG ACAAGCATAC ATATAAAAGT TTTATGAGTT 
    ATTTAAATTA TTCAATTTTG GTTTAAGATT TTAAATGATG TGGACATATA 
    TAAGAAAGCA AAACCATATA CTGTATATAA TCCATTCTTC GTAACATTTG 
    GTCTGTTCTT GGCTCGGAAG TTGTCTCTGA CCAGAGCTGT GTTCTACATG 
    ATTATGCAAT GTCTCGGAGC CATCTGTGGT GCCATCTTTA AGACTAGTGA 
    ATATCGGCGC ATCTTTAAGC CTAGTGAATT TCGGCCCATC TTCAAGACTA 
    GTATGGAGGC CTGTTAAGGG TCTTCTAATA CAGCTCAACA AGCCTTTTTG 
    TGTNTGCCTA GTGAATTTCT AATACACTTT GTCTCTGGTC AAACACTTTC 
    ATGCGTTTTT TTTATAAATA TGTTTAATGA GCATAAATGT GCGGCTCAAA 
    GCCGGTGCAA CCTCCCACGG TCAAATAACN AATT

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR