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12-2273-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22063872 [Map]; Strand: w
      • AT1G59930.1 - [+] show detail - MADS-box family protein
        Distance: -2391; Region: intergenic
      • AT1G59940.1 - [+] show detail - response regulator 3
        Distance: 1745; Region: intergenic
    Flanking Genome Sequence: 12-2273-1 - 5-prime edge 
    NTCAAAANAG NTTNCNCANA AGAAAACTTC NANATCNCTT GTAATACTAT 
    CTATCTCTGT GCCTANTGTG NCCAGNCTTG AAGGGAGGNA TAGTNTCTTT 
    GTAACATGAC TAAACATGCC TTGTGTTTTA TTTTTNGGGC CGGGCCNANA 
    ANCACNCGNN GCCCCGGNAN NNTTNTTNNT TTAAAGNNAA AAAAAANNTT 
    TNCNAAAAAA AAAAAAAANN ANNNTTTNAA AAAACCCNAA NTGGANNAAA 
    AAAAANGGGN ANGGNAAAAC CCCCNTTNNT TTTNAAAAAA GGNATTTTGN 
    AAAGTTTNNN NNCNTTTTTN AAAANNANNT AAAANGGGGG NNNAAAAANN 
    NNANTTTTGG GNANNAAAAT TTTTTTTNAA AANAAAAAAC CGGGGNNGGG 
    ANNNNCCCNG NCCCTTTAAA NAAANNNNNN NNNGGGNNGG GGGGGGGGGN 
    GGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22063757 [Map]; Strand: w
      • AT1G59930.1 - [+] show detail - MADS-box family protein
        Distance: -2276; Region: intergenic
      • AT1G59940.1 - [+] show detail - response regulator 3
        Distance: 1860; Region: intergenic
    Flanking Genome Sequence: 12-2273-1 - 3-prime edge 
    GTTTTGAAGG TTGTCAGGAA TGCACTAGAG CCTGATGAGT ACAAGAAATT 
    GAAGGAATCA TTCTAGGTTA AAATCTAGTT TATTTGTAAA ACTTTTATAG 
    GCTTAAGTAA CGAACATGTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTNG 
    NNAAANNNA

AT1G59930.1

Model type
Protein coding
Short Description
MADS-box family protein
Computational Description
MADS-box family protein; BEST Arabidopsis thaliana protein match is: MADS-box family protein (TAIR:AT1G59920.1); Has 225 Blast hits to 221 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G59940.1

Model type
Protein coding
Short Description
response regulator 3
Curator Summary
Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.
Computational Description
response regulator 3 (ARR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 4 (TAIR:AT1G10470.1); Has 60077 Blast hits to 59393 proteins in 2784 species: Archae - 301; Bacteria - 52871; Metazoa - 21; Fungi - 539; Plants - 1521; Viruses - 7; Other Eukaryotes - 4817 (source: NCBI BLink).
Link
InterPro Scan - TAIR